Schema for xenoMrna
  Database: caeJap1    Primary Table: xenoMrna    Row Count: 2,570,219   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 140int(10) unsigned Number of bases that match that aren't repeats
misMatches 66int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 19int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 12int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 107int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK017397varchar(255) Query sequence name
qSize 856int(10) unsigned Query sequence size
qStart 58int(10) unsigned Alignment start position in query
qEnd 295int(10) unsigned Alignment end position in query
tName chrUnvarchar(255) Target sequence name
tSize 156378573int(10) unsigned Target sequence size
tStart 39720int(10) unsigned Alignment start position in target
tEnd 40052int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 54,63,4,104,longblob Size of each block
qStarts 58,124,187,191,longblob Start of each block in query.
tStarts 156338521,156338635,1563387...longblob Start of each block in target.

Connected Tables and Joining Fields
        caeJap1.all_est.qName (via xenoMrna.qName)
      caeJap1.all_mrna.qName (via xenoMrna.qName)
      caeJap1.xenoRefFlat.name (via xenoMrna.qName)
      caeJap1.xenoRefGene.name (via xenoMrna.qName)
      caeJap1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585140660191123107+-AK01739785658295chrUn1563785733972040052454,63,4,104,58,124,187,191,156338521,156338635,156338710,156338749,
5857163910194608331+-BC09609622717171903chrUn15637857339720411779160,146,75,382,138,54,63,4,104,717,877,1035,1116,1498,1666,1732,1795,1799,156337396,156337606,156337764,156337897,156338296,156338521,156338635,156338710,156338749,
5857824080194607314+-AK01451827588522121chrUn15637857339720412438226,146,75,537,54,63,4,104,852,1078,1236,1317,1884,1950,2013,2017,156337330,156337606,156337764,156337897,156338521,156338635,156338710,156338749,
5857824080194607314+-AK02896324835591828chrUn15637857339720412438226,146,75,537,54,63,4,104,559,785,943,1024,1591,1657,1720,1724,156337330,156337606,156337764,156337897,156338521,156338635,156338710,156338749,
5857704050194767329+-AK08140924275541824chrUn15637857339720412438226,146,75,537,39,63,4,104,554,780,938,1019,1602,1653,1716,1720,156337330,156337606,156337764,156337897,156338536,156338635,156338710,156338749,
5857684220194607314+-AY22734822625171786chrUn15637857339720412438226,146,75,537,54,63,4,104,517,743,901,982,1549,1615,1678,1682,156337330,156337606,156337764,156337897,156338521,156338635,156338710,156338749,
5857794110194607314+-BC05763722845291798chrUn15637857339720412438226,146,75,537,54,63,4,104,529,755,913,994,1561,1627,1690,1694,156337330,156337606,156337764,156337897,156338521,156338635,156338710,156338749,
5857484420194607314+-BC07414625445801849chrUn15637857339720412438226,146,75,537,54,63,3,105,580,806,964,1045,1612,1678,1741,1744,156337330,156337606,156337764,156337897,156338521,156338635,156338728,156338748,
5857374530194607314+-BC07690123525861855chrUn15637857339720412438226,146,75,537,54,63,3,105,586,812,970,1051,1618,1684,1747,1750,156337330,156337606,156337764,156337897,156338521,156338635,156338728,156338748,
5857244330195937347+-BC08041424015211790chrUn15637857339720412438192,147,75,537,54,63,3,105,521,746,905,986,1553,1619,1682,1685,156337330,156337605,156337764,156337897,156338521,156338635,156338728,156338748,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.