Schema for estOrientInfo
  Database: caeRem2    Primary Table: estOrientInfo    Row Count: 22,296   Data last updated: 2016-05-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 790smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 26892713int(10) unsigned range Start position in chromosome
chromEnd 26893027int(10) unsigned range End position in chromosome
name DN911454varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        caeRem2.all_est.qName (via estOrientInfo.name)
      caeRem2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
790chrUn2689271326893027DN91145400000
869chrUn3727146437271957DN172779000160
1352chrUn100625851100627934DN95621320100
585chrUn1786318696DR40821110000
585chrUn1844819256DR77622520000
585chrUn6610266877DR77903000000
585chrUn6626967157DR78036712000
585chrUn6680867636DR78022910000
585chrUn6735268305DR409090200024
585chrUn6778968261DR40633321000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.