Schema for intronEst
  Database: caeRem3    Primary Table: intronEst    Row Count: 17,469   Data last updated: 2016-05-28
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1152smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 619int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 93int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1371int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName DN956213varchar(255) values Query sequence name
qSize 715int(10) unsigned range Query sequence size
qStart 2int(10) unsigned range Alignment start position in query
qEnd 715int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 149111736int(10) unsigned range Target sequence size
tStart 74362775int(10) unsigned range Alignment start position in target
tEnd 74364858int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 386,100,104,122,longblob   Size of each block
qStarts 0,386,486,591,longblob   Start of each block in query.
tStarts 74362775,74364397,74364632,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        caeRem3.all_est.qName (via intronEst.qName)
      caeRem3.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
115261909301121371-DN9562137152715chrUn14911173674362775743648584386,100,104,122,0,386,486,591,74362775,74364397,74364632,74364736,
58582414104139568+DR40932486710862chrUn1491117369029104361114,117,84,88,140,304,31,17,30,4,10,10,29,146,230,318,458,763,794,811,847,852,9029,9045,9240,9622,9839,10033,10339,10371,10389,10422,10426,
585701423012227223-DR7791547522752chrUn14911173626752277031610,6,4,6,6,5,14,43,16,23,24,11,145,109,174,132,0,11,23,28,35,42,48,64,108,128,152,178,190,335,444,618,26752,26762,26773,26777,26783,26789,26794,26808,26851,26870,26893,26918,26977,27166,27349,27571,
58549915144011259-DR4071126742661chrUn1491117361233191240364190,45,335,88,13,204,249,584,123319,123509,123555,123948,
58671521300457298+DR7814758542854chrUn14911173613443413557912306,96,64,204,104,9,10,4,23,5,15,7,2,308,404,468,672,776,785,795,800,824,830,847,134434,134831,134984,135096,135350,135504,135514,135525,135529,135552,135557,135572,
5865427111012259-DR7781996822664chrUn1491117361431131438324115,4,477,64,18,133,139,616,143113,143230,143234,143768,
586725090002503+DR7777957691735chrUn1491117361603871616243168,264,302,1,169,433,160387,160604,161322,
586812080510464+DR4082668492832chrUn149111736161325162209821,706,5,14,45,4,13,12,2,25,732,738,753,798,802,820,161325,161347,162053,162058,162072,162118,162181,162197,
586505821026458-DR7798755422542chrUn149111736223136223728626,9,19,42,293,145,0,31,40,60,102,395,223136,223168,223179,223198,223241,223583,
58682152058352-DR7762338371837chrUn14911173622331922419977,4,9,28,166,522,92,0,11,16,26,55,221,744,223319,223327,223331,223340,223368,223583,224107,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.