Schema for intronEst
  Database: calJac1    Primary Table: intronEst    Row Count: 253,253   Data last updated: 2016-05-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 662int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 2int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 2766int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName EH382039varchar(255) values Query sequence name
qSize 680int(10) unsigned range Query sequence size
qStart 13int(10) unsigned range Alignment start position in query
qEnd 680int(10) unsigned range Alignment end position in query
tName Contig10133varchar(255) values Target sequence name
tSize 76580int(10) unsigned range Target sequence size
tStart 19483int(10) unsigned range Alignment start position in target
tEnd 22914int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 66,13,8,8,148,99,323,longblob   Size of each block
qStarts 13,79,92,101,110,258,357,longblob   Start of each block in query.
tStarts 19483,21693,21707,21715,217...longblob   Start of each block in target.

Connected Tables and Joining Fields
        calJac1.all_est.qName (via intronEst.qName)
      calJac1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856623002242766+EH38203968013680Contig10133765801948322914766,13,8,8,148,99,323,13,79,92,101,110,258,357,19483,21693,21707,21715,21723,22128,22591,
5946763010055792-EH3802716800680Contig1031334380121534912218216273,140,55,50,105,57,0,273,413,468,518,623,1215349,1215945,1216166,1218076,1221143,1221764,
58566520013321218+EH38092868010680Contig103148835836582584674183,141,311,32,10,193,334,648,36582,44869,58122,58435,
58767280000311376+EH3814526800680Contig1038512668264815276871491,122,179,288,0,91,213,392,264815,266202,275927,276583,
5886782000021050+EH3826726800680Contig10446315484671594688893148,283,249,0,148,431,467159,467955,468640,
5885797940002136+EH3826046800680Contig1044631548478152478968369,274,337,0,69,343,478152,478352,478631,
588573110600031274+EH3825636800680Contig10446315484794674814214132,112,129,307,0,132,244,373,479467,480276,480881,481114,
58566620051253938+EH3808536800680Contig1059589825293975451018,91,8,13,9,4,217,99,204,5,0,19,111,127,141,151,155,372,471,675,2939,2957,3048,3062,3075,3084,3895,6593,7335,7540,
5856791000032615+EH3811106800680Contig106554698136941402364284,106,79,211,0,284,390,469,36941,39272,39862,40025,
5854380004502144+EH3827716800488Contig10746810206881869400695,318,4,5,5,11,0,95,414,465,471,477,68818,69019,69337,69379,69384,69389,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.