Schema for intronEst
  Database: calJac3    Primary Table: intronEst    Row Count: 247,869   Data last updated: 2016-06-10
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 785smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 677int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 7515int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName EH380667varchar(255) values Query sequence name
qSize 680int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 680int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 210400635int(10) unsigned range Target sequence size
tStart 26243338int(10) unsigned range Alignment start position in target
tEnd 26251533int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 518,162,longblob   Size of each block
qStarts 0,518,longblob   Start of each block in query.
tStarts 26243338,26251371,longblob   Start of each block in target.

Connected Tables and Joining Fields
        calJac3.all_est.qName (via intronEst.qName)
      calJac3.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7856773000017515-EH3806676800680chr121040063526243338262515332518,162,0,518,26243338,26251371,
80065927051254185-EH3808536800680chr12104006352825671728261570107,202,99,217,4,9,13,8,92,17,0,7,209,308,525,530,540,561,570,663,28256717,28257157,28258002,28260582,28261421,28261425,28261434,28261453,28261461,28261553,
8026800000021801-EH3827656800680chr121040063528445287284477683485,124,71,0,485,609,28445287,28446734,28447697,
1164657000110617833+EH38089968013680chr121040063575914348759328387101,45,257,112,112,22,8,13,114,159,416,528,650,672,75914348,75921240,75922772,75929886,75932684,75932807,75932830,
11676538001134932+EH38213368013675chr121040063576284791762903845107,74,71,164,245,13,121,195,266,430,76284791,76284898,76285096,76285800,76290139,
12834951311201431126034-EH38106768017680chr12104006359153877191565425126,5,16,21,78,130,66,72,6,57,116,47,0,6,11,27,48,126,256,322,394,443,500,616,91538771,91538778,91538784,91538801,91538823,91539273,91540506,91540674,91540749,91559895,91561381,91565378,
1283474111120255826041-EH38213668028680chr12104006359153878791565425929,74,130,66,72,6,57,116,47,0,41,115,245,311,383,432,489,605,91538787,91538827,91539273,91540506,91540674,91540749,91559895,91561381,91565378,
135948280011516212+EH382136680189680chr1210400635101514080101530782759,52,69,66,130,82,32,189,248,300,369,435,565,648,101514080,101519849,101528830,101529001,101530168,101530668,101530750,
135949570000916216+EH381067680178680chr12104006351015140801015307981059,52,69,66,130,81,18,16,5,6,178,237,289,358,424,554,635,653,669,674,101514080,101519849,101528830,101529001,101530168,101530668,101530750,101530769,101530786,101530792,
15236591000024646+EH38134868020680chr12104006351230205781230258843254,76,330,20,274,350,123020578,123023330,123025554,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.