|
|---|
| |
Database: calJac4 Primary Table: all_est Row Count: 328,681 Data last updated: 2020-09-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
|---|
| bin | 607 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 677 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 3 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 1 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 1 | int(10) unsigned | range | Number of bases inserted in target |
| strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | EH381499 | varchar(255) | values | Query sequence name |
| qSize | 680 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 680 | int(10) unsigned | range | Alignment end position in query |
| tName | chr1 | varchar(255) | values | Target sequence name |
| tSize | 217961735 | int(10) unsigned | range | Target sequence size |
| tStart | 2922232 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 2922913 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 2 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 666,14, | longblob | | Size of each block |
| qStarts | 0,666, | longblob | | Start of each block in query. |
| tStarts | 2922232,2922899, | longblob | | Start of each block in target. |
|
| |
|
|
|
Connected Tables and Joining Fields
|
|
|
Sample Rows
|
|---|
| |
| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
|---|
| 607 | 677 | 3 | 0 | 0 | 0 | 0 | 1 | 1 | + | EH381499 | 680 | 0 | 680 | chr1 | 217961735 | 2922232 | 2922913 | 2 | 666,14, | 0,666, | 2922232,2922899, |
| 661 | 676 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | EH381284 | 680 | 0 | 677 | chr1 | 217961735 | 10086067 | 10086744 | 1 | 677, | 3, | 10086067, |
| 680 | 662 | 9 | 0 | 0 | 1 | 9 | 1 | 8 | + | EH382042 | 680 | 0 | 680 | chr1 | 217961735 | 12477182 | 12477861 | 2 | 631,40, | 0,640, | 12477182,12477821, |
| 684 | 679 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | EH381231 | 680 | 0 | 680 | chr1 | 217961735 | 13023099 | 13023779 | 1 | 680, | 0, | 13023099, |
| 694 | 679 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | EH381306 | 680 | 0 | 680 | chr1 | 217961735 | 14383578 | 14384258 | 1 | 680, | 0, | 14383578, |
| 694 | 670 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | + | EH382325 | 680 | 0 | 680 | chr1 | 217961735 | 14383588 | 14384268 | 1 | 680, | 0, | 14383588, |
| 695 | 677 | 0 | 0 | 0 | 2 | 2 | 2 | 2 | - | EH380505 | 680 | 1 | 680 | chr1 | 217961735 | 14488771 | 14489450 | 5 | 637,4,23,5,8, | 0,638,642,666,671, | 14488771,14489408,14489413,14489436,14489442, |
| 712 | 677 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | - | EH380422 | 680 | 0 | 679 | chr1 | 217961735 | 16704677 | 16705356 | 1 | 679, | 1, | 16704677, |
| 721 | 675 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | + | EH381948 | 680 | 4 | 680 | chr1 | 217961735 | 17832225 | 17832902 | 2 | 663,13, | 4,667, | 17832225,17832889, |
| 748 | 672 | 8 | 0 | 0 | 0 | 0 | 1 | 1 | - | EH381018 | 680 | 0 | 680 | chr1 | 217961735 | 21435307 | 21435988 | 2 | 9,671, | 0,9, | 21435307,21435317, |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
|
US Server