Schema for xenoRefFlat
  Database: canFam2    Primary Table: xenoRefFlat    Row Count: 328,805   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName DRD3varchar(255) values Name of gene as it appears in genome browser.
name NM_001033912varchar(255) values Name of gene
chrom chr33varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 21414880int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 21449167int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 21414880int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 21449167int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 21414880,21416244,21420693,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 21415077,21416527,21420890,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        canFam2.xenoMrna.qName (via xenoRefFlat.name)
      canFam2.xenoRefGene.name (via xenoRefFlat.name)
      canFam2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
DRD3NM_001033912chr33-21414880214491672141488021449167621414880,21416244,21420693,21428034,21438205,21448897,21415077,21416527,21420890,21428177,21438318,21449167,
ablim3NM_001080598chr28-28293845283942482829384528394248428293845,28310071,28354732,28394161,28293947,28310167,28354864,28394248,
TPM3NM_001043353chr7+460198644604213846019963460388962546019864,46025768,46027354,46027799,46029110,46029881,46030152,46038816,46039591,46039673,46039758,46039966,46040146,46040335,46 ...46020091,46025906,46027472,46027870,46029186,46029944,46030222,46038982,46039618,46039699,46039897,46040005,46040185,46040416,46 ...
pgp-6NM_001270189chr14-16595325166474161659532516647416516595325,16596280,16637473,16646557,16647275,16595469,16596421,16637617,16646713,16647416,
KRT23NM_001282433chr9+25079438250960902508700825095787925079438,25086987,25088413,25089881,25090106,25090133,25093046,25095768,25095902,25079528,25087076,25088570,25090043,25090110,25090244,25093271,25095787,25096090,
SLC38A9NM_001282429chr2-457724904584217145773121458226411845772490,45772587,45772832,45772923,45773020,45774721,45780698,45782381,45793797,45809766,45811659,45816233,45820383,45822064,45 ...45772535,45772823,45772856,45772950,45773287,45774811,45780847,45782495,45793904,45809874,45811854,45816293,45820552,45822068,45 ...
nt5dc2NM_001102918chr20+402406034024535740240603402453571440240603,40240926,40241145,40241250,40241406,40241684,40241792,40241919,40242053,40242280,40244539,40244724,40244988,40245102,40240789,40241001,40241148,40241303,40241500,40241765,40241813,40241967,40242160,40242374,40244628,40244866,40245001,40245357,
GALNT1NM_001384443chr32-23135461231368122313681223136812823135461,23135557,23135738,23136129,23136227,23136377,23136614,23136680,23135536,23135728,23136074,23136168,23136365,23136502,23136650,23136812,
med12NM_001039461chrX+584140735843470458414076584347044458414073,58414727,58415042,58415372,58416075,58416201,58416447,58416689,58416800,58417299,58417602,58417831,58418189,58418899,58 ...58414178,58414823,58415235,58415525,58416141,58416258,58416552,58416776,58416950,58417442,58417708,58417971,58418316,58419025,58 ...
Tsga10NM_001030022chr10+466859674680868146701327468083842046685967,46694560,46700139,46701209,46701810,46703863,46704140,46705134,46727545,46730041,46734500,46736012,46738070,46741950,46 ...46686098,46694776,46700204,46701383,46701936,46704035,46704203,46705286,46727661,46730196,46734556,46736181,46738181,46742134,46 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.