Schema for all_est
  Database: cb1    Primary Table: all_est    Row Count: 2,411   Data last updated: 2016-05-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 372int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 3int(10) unsigned range Number of 'N' bases
qNumInsert 9int(10) unsigned range Number of inserts in query
qBaseInsert 9int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 307int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName R04092varchar(255) values Query sequence name
qSize 384int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 384int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 109024926int(10) unsigned range Target sequence size
tStart 34329int(10) unsigned range Alignment start position in target
tEnd 35011int(10) unsigned range Alignment end position in target
blockCount 13int(10) unsigned range Number of blocks in alignment
blockSizes 38,21,19,4,22,33,4,18,8,148...longblob   Size of each block
qStarts 0,39,61,80,85,107,141,146,1...longblob   Start of each block in query.
tStarts 34329,34367,34388,34408,344...longblob   Start of each block in target.

Connected Tables and Joining Fields
        cb1.all_mrna.qName (via all_est.qName)
      cb1.estOrientInfo.name (via all_est.qName)
      cb1.intronEst.qName (via all_est.qName)
      cb1.xenoRefGene.name (via all_est.qName)
      cb1.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585372003994307+R040923840384chrUn10902492634329350111338,21,19,4,22,33,4,18,8,148,9,33,18,0,39,61,80,85,107,141,146,164,173,322,332,366,34329,34367,34388,34408,34412,34737,34772,34776,34795,34803,34951,34960,34993,
585301000442465+R0411532822327chrUn1090249265736358129717,4,9,28,15,215,13,22,40,45,54,83,98,314,57363,57380,57384,57857,57885,57901,58116,
5853620046711-R047373842375chrUn109024926928669323377,16,4,24,9,283,23,9,18,35,40,65,75,359,92866,92874,92890,92894,92918,92927,93210,
5851670000000-R048341670167chrUn10902492692982931491167,0,92982,
58735800088144+R032633660366chrUn10902492635349235389410195,110,4,15,4,10,7,4,5,4,0,195,306,311,327,332,343,351,356,362,353492,353731,353841,353845,353860,353864,353874,353881,353885,353890,
58724020166144+R049892490249chrUn109024926353635353922852,143,11,5,4,18,4,6,0,52,196,208,214,219,238,243,353635,353731,353874,353885,353890,353894,353912,353916,
5873261031123-R0326235221352chrUn1090249263547863551193291,16,23,0,292,308,354786,355079,355096,
5883131033300+R038143200320chrUn109024926394211394528449,240,5,23,0,50,291,297,394211,394260,394500,394505,
58829300271727-R039383120312chrUn109024926396431396733815,17,8,66,12,95,7,75,0,18,36,45,112,125,229,237,396431,396447,396464,396472,396538,396550,396651,396658,
58939500268348-R050594050405chrUn109024926652808653253846,19,5,261,5,17,7,37,0,47,66,72,334,340,358,368,652808,652854,652918,652923,653184,653189,653208,653216,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.