Schema for xenoMrna
  Database: ce10    Primary Table: xenoMrna    Row Count: 1,047,632   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 461int(10) unsigned Number of bases that match that aren't repeats
misMatches 134int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 2int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 4977int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName EU726784varchar(255) Query sequence name
qSize 710int(10) unsigned Query sequence size
qStart 112int(10) unsigned Alignment start position in query
qEnd 709int(10) unsigned Alignment end position in query
tName chrIvarchar(255) Target sequence name
tSize 15072423int(10) unsigned Target sequence size
tStart 4274int(10) unsigned Alignment start position in target
tEnd 9846int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 117,3,289,102,84,longblob Size of each block
qStarts 112,229,232,523,625,longblob Start of each block in query.
tStarts 15062577,15062701,15066096,...longblob Start of each block in target.

Connected Tables and Joining Fields
        ce10.all_est.qName (via xenoMrna.qName)
      ce10.all_mrna.qName (via xenoMrna.qName)
      ce10.refGene.name (via xenoMrna.qName)
      ce10.refSeqAli.qName (via xenoMrna.qName)
      ce10.xenoRefFlat.name (via xenoMrna.qName)
      ce10.xenoRefGene.name (via xenoMrna.qName)
      ce10.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585461134001244977+-EU726784710112709chrI15072423427498465117,3,289,102,84,112,229,232,523,625,15062577,15062701,15066096,15067127,15068065,
5857218001834307+-EZ61306628921119chrI150724231156415961414,4,24,48,21,35,39,71,15056462,15056500,15057959,15060811,
5856129000000+-JI012858355898chrI150724231687616966190,8,15055457,
5856316000032290++JL656063259178257chrI150724231746219831414,26,6,33,178,192,218,224,17462,18968,19646,19798,
7715962001353412122++EZ451157666330586chrIV1749379342437984656141487,63,35,36,330,417,515,550,4243798,4243918,4244163,4656105,
6663367600114163++HP5475194271427chrIII1378370010740951107414262311,101,1,326,10740951,10741325,
91278000071340867++HP96212741520155chrI15072423189741359976818,14,22,19,18,16,13,15,20,38,52,74,93,111,127,140,18974,19817,396341,825501,963120,965116,1359600,1359961,
9228220000131485949++HP9664904710250chrI150724231897515051741417,12,28,20,25,2,25,16,4,20,14,21,19,27,0,17,29,57,77,102,104,129,145,149,169,183,204,223,18975,19817,396346,543555,825501,825625,963120,965116,965189,1003767,1220814,1359599,1504860,1505147,
915410000081934918++HP9677675471165chrI15072423189751954057917,7,32,19,13,20,21,13,22,1,18,25,57,76,89,109,130,143,18975,19820,412601,825501,963120,1003767,1392792,1681260,1954035,
585682500002102+-JP45228933023116chrI150724232287823073320,23,50,23,43,66,15049350,15049445,15049495,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.