Schema for ensPep
  Database: ce11    Primary Table: ensPep    Row Count: 33,552   Data last updated: 2021-05-25
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name 2L52.1a.1varchar(255) values Name of gene - same as in genePred
seq MSMVRNVSNQSEKLEILSCKWVGCLKS...longblob   Peptide sequence

Connected Tables and Joining Fields
        ce11.ensGene.name (via ensPep.name)
      ce11.ensGtp.transcript (via ensPep.name)
      ce11.ensemblSource.name (via ensPep.name)
      ce11.ensemblToGeneName.name (via ensPep.name)
      knownGeneV39.knownToEnsembl.value (via ensPep.name)

Sample Rows
 
nameseq
2L52.1a.1MSMVRNVSNQSEKLEILSCKWVGCLKSTEVFKTVEKLLDHVTADHIPEVIVNDDGSEEVVCQWDCCEMGASRGNLQKKKEWMENHFKTRHVRKAKIFKCLIEDCPVVKSSSQEIETHLRISHPINPKK ...
2L52.1b.1MSDNEEVYVNFRGMNCISTGKSASMVPSKRRNWPKRVKKRLSTQRNNQKTIRPPELNKNNIEIKDMNSNNLEERNREECIQPVSVEKNILHFEKFKSNQICIVRENNKFREGTRRRRKNSGESEDLKI ...
2RSSE.1a.1MTVASYSMVLCGSSDDHRYRGRIEKVKFGVPINEAFAHDIPATLLMLLLKVNKDGPAKKDIWRAPGNQAQVRKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPNGIFGRDNEETLFNSASTGMDI ...
2RSSE.1b.1MTVASYSMVLCGSSDDHRYRGRIEKVKFGVPINEAFAHDIPATLLMLLLKVNKDGPAKKDIWRAPGNQAQVRKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPNGIFGRDNEETLFNSASTGMDI ...
2RSSE.1c.1MTVASYSMVLCGSSDDHRYRGRIEKVKFGVPINEAFAHDIPATLLMLLLKVNKDGPAKKDIWRAPGNQAQVRKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPNGIFGRDNEETLFNSASTGMDI ...
3R5.1a.1MFSPLECRLAVACKFQDDRYYKLFHQYFDLLAQVHSVVETMDGLWMLRVWRAQKFGPESIKERRERQLFHVTQFSFKRYIVPPNPRIGKAIEEFGKEYLIEINVYDEHRADLVSLNSGNFVAIQNVHA ...
3R5.1b.1MFSPLECRLAVACKFQDDRYYKLFHQYFDLLAQVHSVVETMDGLWMLRVWRAQKFGPESIKERRERQLFHVTQFSFKRYIVPPNPRIGKAIEEFGKEYLIEINVYDEHRADLSGNFVAIQNVHAASTP ...
4R79.1a.1MLDHVLLLTYCLVSTVVRSQPSADVFRSFAGYIPEDHRVTHHEWQNSGKFQGDIDGVDPNLLKLPEGPVLFNALKNKQLTWEGGVIPYEMDTAFSPNEIKILEKAFDSYRRTTCIRFEKREGQTDYLN ...
4R79.1b.1MHSVGFWHEHSRADRDDHIKINWDNILPGMKSQFDKISAVLQDLQGENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSPLDIVKINKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKN ...
4R79.2a.1MEVESATNSSSEESIFHEQTRKLFRLCDTKHIGLIGQSDLETLVDLIPQDDLHKIARFIGDQKVNEQAFCRILKAIVNQSLQQNMAKNEVEIPCILDKSQYLEESSLEDEMREIEQNKSYLDDPLTKI ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.