Schema for xenoMrna
  Database: ce11    Primary Table: xenoMrna    Row Count: 1,057,070   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 66int(10) unsigned Number of bases that match that aren't repeats
misMatches 8int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 7int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 17856int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName EZ387036varchar(255) Query sequence name
qSize 208int(10) unsigned Query sequence size
qStart 110int(10) unsigned Alignment start position in query
qEnd 191int(10) unsigned Alignment end position in query
tName chrIvarchar(255) Target sequence name
tSize 15072434int(10) unsigned Target sequence size
tStart 1062int(10) unsigned Alignment start position in target
tEnd 18992int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 18,14,30,12,longblob Size of each block
qStarts 110,128,149,179,longblob Start of each block in query.
tStarts 15053442,15054453,15070875,...longblob Start of each block in target.

Connected Tables and Joining Fields
        ce11.all_est.qName (via xenoMrna.qName)
      ce11.all_mrna.qName (via xenoMrna.qName)
      ce11.refGene.name (via xenoMrna.qName)
      ce11.refSeqAli.qName (via xenoMrna.qName)
      ce11.xenoRefFlat.name (via xenoMrna.qName)
      ce11.xenoRefGene.name (via xenoMrna.qName)
      ce11.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856680017317856+-EZ387036208110191chrI15072434106218992418,14,30,12,110,128,149,179,15053442,15054453,15070875,15071360,
585490146000065223+-EU72678471073709chrI15072434427410133739,117,3,288,3,102,84,73,112,229,232,520,523,625,15062301,15062588,15062712,15066107,15067042,15067138,15068076,
58518711300217434558+-JI1753121173368842chrI15072434525110109415,120,123,42,368,383,527,800,15062325,15062588,15066131,15067141,
5851308600151148+-CR7143528259276chrI1507243460396303284,132,9,144,15066131,15066263,
5851186500184181+-JO101889730304571chrI1507243460396303275,108,304,463,15066131,15066287,
58516692001916+-JR910199684208475chrI15072434603963032126,132,208,343,15066131,15066263,
58516692001916+-JR910200808332599chrI15072434603963032126,132,332,467,15066131,15066263,
5851156800184184+-JP286563594186453chrI1507243460396306251,132,186,321,15066128,15066263,
5851247700169166+-JT701770790287557chrI1507243460396306293,108,287,449,15066128,15066287,
5851106400184184+-KA192742608215473chrI1507243460426300269,105,215,368,15066134,15066287,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.