Schema for estOrientInfo
  Database: ce2    Primary Table: estOrientInfo    Row Count: 395,475   Data last updated: 2016-05-31
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 4123int(10) unsigned range Start position in chromosome
chromEnd 6242int(10) unsigned range End position in chromosome
name EC037150varchar(255) values Accession of EST
intronOrientation -2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 20smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ce2.all_est.qName (via estOrientInfo.name)
      ce2.est.qName (via estOrientInfo.name)
      ce2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrI41236242EC037150-200020
585chrI41319761BJ793773-300176
585chrI41486329BJ142188-201011
585chrI41805297AV176119-10000
585chrI41835297C30930-11000
585chrI41835297C32232-12000
585chrI42456329CB405158-20080
585chrI51949848EC03711920000
585chrI519410122CB38606030000
585chrI524510232BJ11459530008

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.