Schema for xenoRefFlat
  Database: ce4    Primary Table: xenoRefFlat    Row Count: 33,772   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName H4C5varchar(255) values Name of gene as it appears in genome browser.
name NM_003545varchar(255) values Name of gene
chrom chrVvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 8535018int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 8535336int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 8535018int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 8535330int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 8535018,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 8535336,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ce4.xenoMrna.qName (via xenoRefFlat.name)
      ce4.xenoRefGene.name (via xenoRefFlat.name)
      ce4.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
H4C5NM_003545chrV+853501885353368535018853533018535018,8535336,
H4C5NM_003545chrV+889803188983498898031889834318898031,8898349,
SybNM_078956chrV-665584666562196655846665621926655846,6656165,6656032,6656219,
HdcNM_078955chrII+827107182722138271071827221348271071,8271253,8271478,8272057,8271194,8271412,8271862,8272213,
Rab4NM_079053chrI+382512238259133825122382591323825122,3825808,3825365,3825913,
PfkNM_078952chrX+294100629440812941006294408192941006,2941195,2941477,2941648,2941844,2942963,2943194,2943530,2943641,2941055,2941410,2941603,2941795,2942210,2943140,2943314,2943591,2944081,
LOC732872NM_001046875chrIV-755997675610787559976756107837559976,7560303,7560493,7560189,7560426,7561078,
aldh1a1.LNM_001087771chrIII+507870750803185078707508031855078707,5079247,5079569,5080048,5080291,5078906,5079523,5080015,5080219,5080318,
SMARCA1NM_001191542chrIII-6704284670952367042846709523116704284,6704379,6704742,6707291,6707509,6707644,6707839,6708692,6709086,6709275,6709478,6704332,6704733,6704793,6707396,6707554,6707794,6708589,6708959,6709227,6709356,6709523,
cyb5r3NM_212685chrV+643663964375586436639643755856436639,6436818,6436835,6437152,6437498,6436786,6436821,6437000,6437398,6437558,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.