Schema for mrnaOrientInfo
  Database: choHof1    Primary Table: mrnaOrientInfo    Row Count: 7   Data last updated: 2016-05-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_33448varchar(255) values Reference sequence chromosome or scaffold
chromStart 9254int(10) unsigned range Start position in chromosome
chromEnd 10332int(10) unsigned range End position in chromosome
name HQ141117varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        choHof1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_33448925410332HQ14111701000
585scaffold_432660591HQ14111700000
585scaffold_6462588819292HM80398900100
585scaffold_699958151365DQ32361810000
585scaffold_749845689381DQ32364810000
585scaffold_749845689381DQ32364910000
585scaffold_11765637043841DQ32360600200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.