Schema for ensPep
  Database: ci2    Primary Table: ensPep    Row Count: 19,858   Data last updated: 2010-11-16
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENSCINT00000000005varchar(255) values Name of gene - same as in genePred
seq LWREIPEVADSGHPKDMSKDQIKLQQS...longblob   Peptide sequence

Connected Tables and Joining Fields
        ci2.ensGene.name (via ensPep.name)
      ci2.ensGtp.transcript (via ensPep.name)
      ci2.ensemblSource.name (via ensPep.name)
      ci2.ensemblToGeneName.name (via ensPep.name)
      knownGeneV39.knownToEnsembl.value (via ensPep.name)

Sample Rows
 
nameseq
ENSCINT00000000005LWREIPEVADSGHPKDMSKDQIKLQQSQFEVITSQASYLRSLNILVHHFMEDWAMESTDVLPSTDRKRLFSNIESVKNVEQRFLEDLEKHFWSDLKLTKVCDVIAKYAKQDFSVYILYIQNQVYQDRV ...
ENSCINT00000000006MELKKFDPSEFPSNYHDYKLLGKGGFGEVRACYHASLGRVALKLFRITGGRKDIKRAKRGLEKEAKILQRMKHPHIVTFYGVTSLFEKECLVMEFMEGGNLNELLMSKIVLSWTSRLRLLHELISAIS ...
ENSCINT00000000007EAKILQRMKHPHIVTFYGVTSLFGREGLVMEFMEGGNLDNILMSKIVLSWTGRLRLLHELISAISYLHNHDKKKAFVHGDIKPQNILLTKSRSLKLADFGSVNIRQRTCASTTTFEIPHSTQHTWPFT ...
ENSCINT00000000009MSYTNQLATVENGSQWLTCRVQYLDDTDPFSSTNFPEPTRPPSFTFNIDLPLCEQISGVHRLLKAPHKIGDCTLQLSNTSAYLDLDLSISEQREEFESFFADGVCLVTVGSQVQGSLWKRNSVIIRTQ ...
ENSCINT00000000010YFRMPPAVFDTLLKLVAPKIKKNDIQLSQASAAERLAITLRFLVTGDTYQTIAFSFRTHKATVSIIVPEVCKAIWEILQPQYMPRPTKEMWLQITEGFFRQWNFPNCIGSIDGKHVSLQAPANSGSLY ...
ENSCINT00000000012MRFQTKLVISAFLNKRKFCDSRFKIGSNFSYAISDDFRRSLCDIRDLIDFYAEYLDLPGIVTAETNRWKRKWSKTPNDSLPNDLCSSLAVATAEHYPNIRTMMKIMLTLPVTTATAERSFSQLRRLKT ...
ENSCINT00000000013YLRFQSSWLGQNKWLVYSPSKQGAFCKYCVLFSKKAAGGQNLGMFVHGPLNNYKKATEFIALHSTKKCHQLCKTQAEDFVQTFQSPAGNVVDQMSTHRKQQAIENRKVLGSIVETVKYCGRQNIALRG ...
ENSCINT00000000014RFQSSWLGQNKWLVYSPSKQGAFCKYCVLFSKKAAGGQNLGMFVHGPLNNYKKATEFIALHSTKKCHQLCKTQAEDFVQTFQSPAGNVVDQMSTHRKQQAIENRKVLGSIVETVKYCGRQNIALRGHR ...
ENSCINT00000000015MYSNVMVDRPYAAYDPRASLTAHVSFLQGHQQPIDSKSYPMANHPSASYYPGYEMIPHFAQSLESHLQEMHNSNSRNFHPVQYPTNSTLTNPIACKWRNVKNGGRSCDVIFHDMHELVNHVTRDHVGG ...
ENSCINT00000000017MYSNVMVDRPYAAYDPRASLTAHASFLQGHQQPIDSKSYSMANHPSASYYPGYGMIPHFAQSLESHLQGMHNFNSRENFHPVQYPTHSTLTNPIACKWRNVKNGGRSCDVIFHDMHELVNHVTRDHVG ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.