Schema for all_est
  Database: criGriChoV2    Primary Table: all_est    Row Count: 13   Data last updated: 2018-03-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1363smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 260int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1750int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF022942varchar(255) values Query sequence name
qSize 260int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 260int(10) unsigned range Alignment end position in query
tName LT883665v1varchar(255) values Target sequence name
tSize 169160581int(10) unsigned range Target sequence size
tStart 102000759int(10) unsigned range Alignment start position in target
tEnd 102002769int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 47,109,104,longblob   Size of each block
qStarts 0,47,156,longblob   Start of each block in query.
tStarts 102000759,102002478,102002665,longblob   Start of each block in target.

Connected Tables and Joining Fields
        criGriChoV2.all_mrna.qName (via all_est.qName)
      criGriChoV2.estOrientInfo.name (via all_est.qName)
      criGriChoV2.intronEst.qName (via all_est.qName)
      criGriChoV2.refGene.name (via all_est.qName)
      criGriChoV2.refSeqAli.qName (via all_est.qName)
      criGriChoV2.xenoRefGene.name (via all_est.qName)
      criGriChoV2.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
13632600000021750+AF0229422600260LT883665v1169160581102000759102002769347,109,104,0,47,156,102000759,102002478,102002665,
1363441000000-AF022941222045LT883665v1169160581102004198102004243145,177,102004198,
13631630002426+AF02294122255222LT883665v1169160581102004200102004369426,4,109,24,55,81,86,198,102004200,102004227,102004231,102004345,
6361762001100-AF0229451790179LT883667v1121238278680898068091582166,12,0,167,6808980,6809146,
8711051000000-AF0229441920106LT883670v17655637737495182374952881106,86,37495182,
834130311000012425+AF1809181344291343LT883677v15291004832762624327663632108,1206,29,137,32762624,32765157,
7672080003333+AF0229382176217LT883693v1265245502387254223872753733,13,13,69,60,3,17,6,40,53,67,137,197,200,23872542,23872575,23872589,23872602,23872671,23872732,23872736,
767261000002661-AF0229392610261LT883693v1265245502387280023873722312,52,197,0,12,64,23872800,23872813,23873525,
767223000113662-AF0229402320224LT883693v1265245502387281423873699531,7,12,86,87,8,39,47,59,145,23872814,23872846,23872853,23873525,23873612,
626890000000+AF022944192103192LT883710v1649942153867035386792189,103,5386703,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.