Schema for intronEst
  Database: danRer3    Primary Table: intronEst (chr1_intronEst)    Row Count: 36,523   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 590smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 287int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 3073int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA566428varchar(255) values Query sequence name
qSize 290int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 289int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 55805710int(10) unsigned range Target sequence size
tStart 725375int(10) unsigned range Alignment start position in target
tEnd 728737int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 10,5,25,9,7,30,149,54,longblob   Size of each block
qStarts 1,11,16,41,50,57,87,236,longblob   Start of each block in query.
tStarts 725375,725386,725392,725418...longblob   Start of each block in target.

Connected Tables and Joining Fields
        danRer3.all_est.qName (via intronEst.qName)
      danRer3.est.qName (via intronEst.qName)
      danRer3.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5902872000073073-AA5664282900289chr155805710725375728737810,5,25,9,7,30,149,54,1,11,16,41,50,57,87,236,725375,725386,725392,725418,725428,725436,727197,728683,
5923301000022884+AA4952533310331chr1558057109446769478913152,103,76,0,152,255,944676,945562,947815,
5923770002243233+AA49499139718397chr1558057109455619491717104,53,28,56,15,50,71,18,122,175,203,260,276,326,945561,947815,947869,947987,948043,948058,949100,
6113071000021773-AA6057063124312chr155805710343114834332293120,80,108,0,120,200,3431148,3432523,3433121,
6303817004382119+AA49719645226452chr155805710592547359259806274,50,9,19,18,18,26,301,352,396,416,434,5925473,5925747,5925797,5925837,5925856,5925962,
6303780000053019-AA49528243658436chr1558057105925985592938265,73,104,72,15,109,0,5,78,182,254,269,5925985,5925991,5926185,5927323,5927396,5929273,
635562100001904+AA6586515630563chr155805710663638566378522522,41,0,522,6636385,6637811,
64436830114101847+AA5425023760376chr155805710784178478440031163,35,111,65,42,6,8,15,6,12,9,0,63,98,209,274,316,322,330,345,355,367,7841784,7843512,7843548,7843752,7843818,7843938,7843945,7843954,7843970,7843981,7843994,
6645540001142174+AA6058475594559chr1558057101040501310407741615,301,90,60,84,4,4,20,321,411,471,555,10405013,10405028,10405330,10407166,10407652,10407737,
68967530000179+AA6056646813681chr15580571013648710136494672619,59,3,622,13648710,13649408,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.