Schema for intronEst
  Database: danRer4    Primary Table: intronEst (chr1_intronEst)    Row Count: 58,835   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 260int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 945int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA566413varchar(255) values Query sequence name
qSize 310int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 262int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 70589895int(10) unsigned range Target sequence size
tStart 538295int(10) unsigned range Alignment start position in target
tEnd 539502int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 113,33,50,8,58,longblob   Size of each block
qStarts 0,113,146,196,204,longblob   Start of each block in query.
tStarts 538295,538409,539384,539435...longblob   Start of each block in target.

Connected Tables and Joining Fields
        danRer4.all_est.qName (via intronEst.qName)
      danRer4.est.qName (via intronEst.qName)
      danRer4.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
589260200004945+AA5664133100262chr1705898955382955395025113,33,50,8,58,0,113,146,196,204,538295,538409,539384,539435,539444,
5893843000022105-AA6587273870387chr1705898956172516197433169,125,93,0,169,294,617251,619123,619650,
5933623000032052+AA60592244419384chr170589895105938410618014161,48,129,27,19,180,228,357,1059384,1060672,1061644,1061774,
5934649002291552+AA49461948510485chr170589895113997011419951255,95,4,4,18,8,146,57,17,18,11,40,10,65,160,164,168,187,195,342,399,416,434,445,1139970,1140026,1140123,1140420,1141539,1141557,1141566,1141712,1141770,1141788,1141943,1141955,
594116000001321+AA4954351240116chr17058989513016851302122224,92,0,24,1301685,1302030,
5952955001124988-AA49512835231332chr170589895131638513216733121,160,19,20,141,302,1316385,1321492,1321654,
5964847000015667+AA6587184910491chr170589895145142214575802418,73,0,418,1451422,1457507,
5995000001155385+AA6061265010501chr17058989518418201847705762,55,64,137,111,25,46,0,63,118,182,319,430,455,1841820,1841882,1842068,1845641,1846164,1847633,1847659,
5991932006761487-AA5497952090202chr17058989518461631847845138,6,6,4,13,7,6,4,56,16,11,47,11,7,17,24,31,36,50,57,64,68,124,140,151,198,1846163,1846171,1846177,1846183,1846187,1846200,1846208,1846214,1846219,1847633,1847650,1847662,1847834,
5992020000041485-AA5666762170202chr170589895184616318478505112,16,12,46,16,15,127,143,155,201,1846163,1847633,1847650,1847663,1847834,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.