Schema for all_est
  Database: danRer5    Primary Table: all_est    Row Count: 1,849,223   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 385int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AA495159varchar(255) Query sequence name
qSize 402int(10) unsigned Query sequence size
qStart 17int(10) unsigned Alignment start position in query
qEnd 402int(10) unsigned Alignment end position in query
tName Zv7_NA101varchar(255) Target sequence name
tSize 250896int(10) unsigned Target sequence size
tStart 126442int(10) unsigned Alignment start position in target
tEnd 126827int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 385,longblob Size of each block
qStarts 0,longblob Start of each block in query.
tStarts 126442,longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer5.all_mrna.qName (via all_est.qName)
      danRer5.estOrientInfo.name (via all_est.qName)
      danRer5.intronEst.qName (via all_est.qName)
      danRer5.refGene.name (via all_est.qName)
      danRer5.refSeqAli.qName (via all_est.qName)
      danRer5.xenoMrna.qName (via all_est.qName)
      danRer5.xenoRefGene.name (via all_est.qName)
      danRer5.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5853850000000-AA49515940217402Zv7_NA1012508961264421268271385,0,126442,
5852102001121453-AA497348370157370Zv7_NA10483147011802134673101,49,62,0,101,151,11802,12758,13405,
585426700001259+AA6061434330433Zv7_scaffold255334850710894510963728,425,0,8,108945,109212,
58510950026412-AA5554432060120Zv7_scaffold254929048210672310684956,6,9,82,11,86,92,102,113,195,106723,106735,106742,106755,106838,
585311000312111737-AA5498103320323Zv7_NA10671348153311035158138,6,5,11,19,6,33,12,52,27,9,61,62,9,18,24,29,43,62,68,101,113,165,192,209,270,33110,33121,33128,33134,33151,33171,33178,33212,33225,34680,34798,34807,35096,
58516601634223145+AA5555892575212Zv7_NA109220035619915202456126,26,8,11,6,8,5,132,159,186,197,204,19915,20041,20067,20216,20228,20237,
58518103102841048+AA5663222200220Zv7_NA109220035619966212265108,16,45,21,22,0,108,127,177,198,19966,20197,20217,21181,21204,
73381500123230582-AA54257842032420Zv7_scaffold24988182871570803880484120,161,10,95,0,122,283,293,157080,157201,190550,387953,
585220000167413+AA5666802680226Zv7_NA113136500146821018109,41,26,13,13,4,4,10,0,109,150,176,189,202,206,216,1468,1975,2017,2044,2058,2072,2077,2091,
585491400004246-AA6057354950495Zv7_NA1131365004055479656,102,111,128,148,0,6,108,219,347,4055,4062,4250,4519,4648,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.