Schema for mgcFullMrna
  Database: danRer5    Primary Table: mgcFullMrna    Row Count: 19,052   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1002int(10) unsigned range Number of bases that match that aren't repeats
misMatches 33int(10) unsigned range Number of bases that don't match
repMatches 961int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 14int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 4619int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BC159105varchar(255) values Query sequence name
qSize 2039int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 2010int(10) unsigned range Alignment end position in query
tName Zv7_NA1varchar(255) values Target sequence name
tSize 126708int(10) unsigned range Target sequence size
tStart 81565int(10) unsigned range Alignment start position in target
tEnd 88180int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 224,152,901,719,longblob   Size of each block
qStarts 0,224,376,1291,longblob   Start of each block in query.
tStarts 81565,82396,86560,87461,longblob   Start of each block in target.

Connected Tables and Joining Fields
        danRer5.all_mrna.qName (via mgcFullMrna.qName)
      danRer5.mgcGenes.name (via mgcFullMrna.qName)
      danRer5.mrnaOrientInfo.name (via mgcFullMrna.qName)
      hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585100233961011424619+BC159105203902010Zv7_NA112670881565881804224,152,901,719,0,224,376,1291,81565,82396,86560,87461,
5855374386901441512+BC096928148601453Zv7_NA11267089286195822551,151,763,241,243,0,51,202,965,1210,92861,93613,94570,95335,95579,
58562330000510431-BC0762968290626Zv7_NA1126708110395121452669,125,88,131,88,125,203,272,397,485,616,704,110395,111060,112340,116511,118284,121327,
58553110000116765-BC05512432880532Zv7_NA100011100416666339632169,363,2756,2925,16666,33600,
585108410000932241-BC15352814923811466Zv7_NA10011278949157512490110246,166,112,128,70,74,41,46,99,103,26,272,438,550,678,748,822,863,909,1008,91575,94668,96489,99149,99400,104758,109317,110746,117536,124798,
5851267441011929397-BC12453417293821695Zv7_NA1001127894941921249011130,110,499,112,128,70,74,41,46,99,103,34,64,175,674,786,914,984,1058,1099,1145,1244,94192,94225,94335,96489,99149,99400,104758,109317,110746,117536,124798,
58598010000829394-BC16480312101951176Zv7_NA1001127894945261249019308,112,128,70,74,41,46,99,103,34,342,454,582,652,726,767,813,912,94526,96489,99149,99400,104758,109317,110746,117536,124798,
5851510000000+BC1631687030151Zv7_NA10028496749076492271151,0,49076,
5851510000000+BC1631797030151Zv7_NA10028496749076492271151,0,49076,
5851399280026841504+BC098551145301433Zv7_NA10059809126021689521073,89,71,91,234,99,535,72,122,41,0,73,162,233,324,558,657,1193,1265,1392,26021,35286,53413,55949,60694,64788,68124,68659,68784,68911,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.