Schema for estOrientInfo
  Database: danRer6    Primary Table: estOrientInfo    Row Count: 1,938,992   Data last updated: 2017-11-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom Zv8_NA10281varchar(255) Reference sequence chromosome or scaffold
chromStart 10int(10) unsigned Start position in chromosome
chromEnd 709int(10) unsigned End position in chromosome
name AA495302varchar(255) Accession of EST
intronOrientation 2smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer6.all_est.qName (via estOrientInfo.name)
      danRer6.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Zv8_NA1028110709AA49530220000
585Zv8_NA106791039112949AA56669110008
585Zv8_NA10753510035204AA56647400000
585Zv8_NA11109621443AA65867400008
585Zv8_NA113298009880452AA60583701000
585Zv8_NA11662492325086AA56669700000
585Zv8_NA12511780518480AA495491-2012036
587Zv8_NA1380359012362003AA605983-200020
585Zv8_NA17151089411260AA60569200000
585Zv8_NA197012211579AA65879300100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.