Schema for mrnaOrientInfo
  Database: danRer6    Primary Table: mrnaOrientInfo    Row Count: 55,227   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Zv8_NA10086varchar(255) values Reference sequence chromosome or scaffold
chromStart 3243int(10) unsigned range Start position in chromosome
chromEnd 4110int(10) unsigned range End position in chromosome
name BC124686varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 16smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 34smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer6.all_mrna.qName (via mrnaOrientInfo.name)
      danRer6.mgcFullMrna.qName (via mrnaOrientInfo.name)
      danRer6.mgcGenes.name (via mrnaOrientInfo.name)
      danRer6.refFlat.name (via mrnaOrientInfo.name)
      danRer6.refGene.name (via mrnaOrientInfo.name)
      danRer6.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Zv8_NA1008632434110BC1246861160340
585Zv8_NA10101307313865BC1519250140330
585Zv8_NA101343869645864BC1222144190420
585Zv8_NA101343873245864BC0740504330560
585Zv8_NA101343873845862BC1349144270500
585Zv8_NA101343874345864BC1142994240470
585Zv8_NA101343876045864BC108084322100
585Zv8_NA101343876445864BC1519224190420
585Zv8_NA101345257255746BC124507425000
585Zv8_NA101345266655746BC16563140000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.