Schema for estOrientInfo
  Database: danRer7    Primary Table: estOrientInfo    Row Count: 1,791,115   Data last updated: 2017-11-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom Zv9_NA107varchar(255) Reference sequence chromosome or scaffold
chromStart 18246int(10) unsigned Start position in chromosome
chromEnd 19683int(10) unsigned End position in chromosome
name AA542461varchar(255) Accession of EST
intronOrientation -2smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 12smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 22smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer7.all_est.qName (via estOrientInfo.name)
      danRer7.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Zv9_NA1071824619683AA542461-2012022
585Zv9_NA1072095124266AA54250530000
585Zv9_NA16014521958AA54253201000
585Zv9_NA1631686417255AA5426040014036
585Zv9_NA1631796824384AA54265340000
585Zv9_NA2322857934608AA49469110000
585Zv9_NA2483230032362AA4972560135059
585Zv9_NA3349141061AA56643300000
585Zv9_NA3349141064AA56653200000
585Zv9_NA3349901064AA56623000000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.