Schema for xenoMrna
  Database: danRer7    Primary Table: xenoMrna    Row Count: 5,225,616   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 918smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 164int(10) unsigned Number of bases that match that aren't repeats
misMatches 43int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JI924236varchar(255) Query sequence name
qSize 295int(10) unsigned Query sequence size
qStart 67int(10) unsigned Alignment start position in query
qEnd 274int(10) unsigned Alignment end position in query
tName chr5varchar(255) Target sequence name
tSize 75682077int(10) unsigned Target sequence size
tStart 43686212int(10) unsigned Alignment start position in target
tEnd 43686419int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 207,longblob Size of each block
qStarts 67,longblob Start of each block in query.
tStarts 43686212,longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer7.all_est.qName (via xenoMrna.qName)
      danRer7.all_mrna.qName (via xenoMrna.qName)
      danRer7.refGene.name (via xenoMrna.qName)
      danRer7.refSeqAli.qName (via xenoMrna.qName)
      danRer7.xenoRefFlat.name (via xenoMrna.qName)
      danRer7.xenoRefGene.name (via xenoMrna.qName)
      danRer7.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
91816443000000++JI92423629567274chr57568207743686212436864191207,67,43686212,
58556100012111159+-HP90170817729116Zv9_NA104806225073732239,27,29,89,44330,45528,
918675162001261252+-JL4066838700863chr57568207743713567437146562702,135,0,728,31967421,31968375,
13707421003231101265727+-BC00143821906922051chr46209467537368510386353651136,41,92,311,90,21,71,62,106,176,122,692,911,952,1044,1355,1469,1514,1585,1647,1753,1929,23459310,23459895,23525274,23914868,24102226,24102760,24358767,24426308,24676770,24725699,24726043,
845165870000265739+-JN11112834515267chr3632688763411200634177997389,92,71,15,104,196,29090879,29148217,29156799,
5858019002692489+-EZ865187607424592Zv9_NA10480622951630104330,48,21,424,490,571,17958,18192,18525,
5855019000000++JL515034408223292Zv9_NA1014758938933962169,223,3893,
5854614000000+-JL588471370209269Zv9_NA1014758938983958160,209,43631,
5855120000242625++JL82203221489142Zv9_NA10365247438247060324,12,17,89,113,125,4382,26334,47043,
96120154800814011259974++BC15622139764213571chr958232459245836712464539413142,204,185,141,84,57,81,105,114,147,162,234,93,421,563,767,952,1093,1195,1369,1678,1792,2107,2401,2782,3478,24583671,24589154,24591884,24602332,24608962,24609067,24612684,24621243,24622585,24628708,24631210,24633040,24645301,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.