Schema for xenoMrna
  Database: dm3    Primary Table: xenoMrna    Row Count: 1,908,128   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1541int(10) unsigned Number of bases that match that aren't repeats
misMatches 820int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 11int(10) unsigned Number of inserts in query
qBaseInsert 1089int(10) unsigned Number of bases inserted in query
tNumInsert 14int(10) unsigned Number of inserts in target
tBaseInsert 3343int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName EZ976821varchar(255) Query sequence name
qSize 5690int(10) unsigned Query sequence size
qStart 808int(10) unsigned Alignment start position in query
qEnd 4258int(10) unsigned Alignment end position in query
tName chr2Lvarchar(255) Target sequence name
tSize 23011544int(10) unsigned Target sequence size
tStart 11432int(10) unsigned Alignment start position in target
tEnd 17136int(10) unsigned Alignment end position in target
blockCount 15int(10) unsigned Number of blocks in alignment
blockSizes 81,2,619,120,126,237,66,165...longblob Size of each block
qStarts 808,889,891,1534,1687,1834,...longblob Start of each block in query.
tStarts 22994408,22994811,22995832,...longblob Start of each block in target.

Connected Tables and Joining Fields
        dm3.all_est.qName (via xenoMrna.qName)
      dm3.all_mrna.qName (via xenoMrna.qName)
      dm3.refGene.name (via xenoMrna.qName)
      dm3.refSeqAli.qName (via xenoMrna.qName)
      dm3.xenoRefGene.name (via xenoMrna.qName)
      dm3.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585154182000111089143343+-EZ97682156908084258chr2L2301154411432171361581,2,619,120,126,237,66,165,90,273,108,138,126,114,96,808,889,891,1534,1687,1834,2116,2248,2461,2575,2893,3274,3673,4048,4162,22994408,22994811,22995832,22996475,22996686,22996830,22997118,22997256,22997445,22997565,22997922,22998882,22999324,22999642,23 ...
58547224200755271164+-HP32151621591051371chr2L230115441254814426839,150,18,174,63,90,66,114,105,267,465,576,762,912,1110,1257,22997118,22997283,22997487,22997577,22997760,22997922,22998753,22998882,
585894000187199+-HP3411682482218chr2L230115441353213760239,90,2,128,22997784,22997922,
585138820011219+-HP399812438206438chr2L2301154413738139672174,46,206,392,22997577,22997760,
5852151000043664366+-EZ95923311334521133chr2L2301154413745144265111,90,42,33,39,452,587,794,1031,1094,22997118,22997259,22997463,22997700,22997760,
5851115100134111692+-HP48106851510513chr2L230115441528217136284,78,10,435,22994408,22996184,
6614032150013271378+-LR00224111431081053chr2R211467081005080110051797290,528,108,525,11094911,11095379,
64423611500130130++HP4871281230247628chrX2242282778229267823307254,297,247,331,7822926,7823010,
585874332001351184++HP53305721358272036chr2L2301154426536289266153,195,435,3,228,192,827,983,1178,1613,1616,1844,26536,26769,27052,27501,28014,28734,
58579131300210551286++HP53305821358272036chr2L2301154426536289266153,195,435,3,123,195,827,983,1178,1613,1616,1841,26536,26769,27052,27501,28410,28731,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.