Schema for xenoRefFlat
  Database: droEre1    Primary Table: xenoRefFlat    Row Count: 264,309   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName T9A14.10; T9A14_10varchar(255) values Name of gene as it appears in genome browser.
name NM_120033varchar(255) values Name of gene
chrom scaffold_4929varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 12716430int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 12717036int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 12716430int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 12717036int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 12716430,12716578,12716631,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 12716544,12716588,12716703,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droEre1.xenoMrna.qName (via xenoRefFlat.name)
      droEre1.xenoRefGene.name (via xenoRefFlat.name)
      droEre1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
T9A14.10; T9A14_10NM_120033scaffold_4929-12716430127170361271643012717036412716430,12716578,12716631,12716841,12716544,12716588,12716703,12717036,
T11P11.3; T11P11_3NM_128433scaffold_4845+302170330219973021703302199713021703,3021997,
T11P11.3; T11P11_3NM_128433scaffold_4845+302677230270663026772302706613026772,3027066,
MAP3K6NM_001193236scaffold_4770-595373159573275953731595732765953731,5953791,5955420,5955564,5957159,5957246,5953773,5954496,5955522,5955624,5957213,5957327,
F27F5.23; F27F5_23NM_103590scaffold_4644+125294912530301252949125303011252949,1253030,
CG40498NM_001110872scaffold_4929-22503520225262822250363622504677722503520,22503852,22504075,22504289,22504470,22526145,22526209,22503800,22504020,22504231,22504401,22504700,22526193,22526282,
ST7LNM_138727scaffold_4784-20494235204957642049423520495764520494235,20494901,20495042,20495282,20495686,20494886,20495018,20495249,20495423,20495764,
ATP9BNM_001080255scaffold_4929-12140222121435471214022212143547712140222,12140544,12142188,12142386,12142779,12142971,12143280,12140327,12141876,12142233,12142719,12142941,12143241,12143547,
mfsd14blNM_001142061scaffold_4784+20194148201952042019414820195204220194148,20195117,20194694,20195204,
COL10A1NM_001005153scaffold_4929+511094851142225110948511422285110948,5112300,5112508,5113072,5113171,5113528,5114002,5114080,5110981,5112314,5112513,5113129,5113192,5113563,5114062,5114222,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.