Schema for all_est
  Database: droSim1    Primary Table: all_est    Row Count: 120,235   Data last updated: 2016-12-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 416int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 2int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 151int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BG642292varchar(255) values Query sequence name
qSize 425int(10) unsigned range Query sequence size
qStart 4int(10) unsigned range Alignment start position in query
qEnd 424int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 22036055int(10) unsigned range Target sequence size
tStart 426455int(10) unsigned range Alignment start position in target
tEnd 427026int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 175,245,longblob   Size of each block
qStarts 4,179,longblob   Start of each block in query.
tStarts 426455,426781,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droSim1.all_mrna.qName (via all_est.qName)
      droSim1.est.qName (via all_est.qName)
      droSim1.estOrientInfo.name (via all_est.qName)
      droSim1.intronEst.qName (via all_est.qName)
      droSim1.xenoMrna.qName (via all_est.qName)
      droSim1.xenoRefGene.name (via all_est.qName)
      droSim1.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
588416202001151+BG6422924254424chr2L220360554264554270262175,245,4,179,426455,426781,
5893564021245498-BG64228543114421chr2L220360555540625545221315,7,12,20,43,4,10,14,5,4,8,176,44,10,29,59,72,94,138,144,161,176,182,187,196,373,554062,554079,554110,554122,554143,554186,554190,554271,554285,554290,554294,554302,554478,
622276100002124-BG64230729416293chr2L22036055484990748503083111,106,60,1,112,218,4849907,4850079,4850248,
623407902002101-BG64219043012430chr2L22036055501316050136793274,103,41,0,274,377,5013160,5013486,5013638,
623282200002101-BG6423322850284chr2L22036055501329650136813138,103,43,1,139,242,5013296,5013486,5013638,
6241851021111-BG6421881912191chr2L2203605552368305237019344,65,79,0,44,110,5236830,5236875,5236940,
628328207824577+BG6422414291362chr2L22036055567658856770021039,48,130,37,17,24,13,6,14,9,1,40,89,220,258,280,310,329,338,353,5676588,5676692,5676740,5676870,5676907,5676928,5676956,5676972,5676979,5676993,
628361403712572+BG64227639312392chr2L2203605556765955677035932,70,162,22,7,16,22,32,5,12,44,115,279,302,311,329,354,387,5676595,5676692,5676762,5676925,5676947,5676955,5676972,5676998,5677030,
62838570000165+BG6423563920392chr2L2203605556766035677060224,368,0,24,5676603,5676692,
628383004731275-BG64229643412430chr2L220360555683139568360198,116,6,23,5,63,11,109,46,4,13,130,137,162,168,232,267,376,5683139,5683147,5683263,5683269,5683292,5683297,5683360,5683385,5683555,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.