Schema for mrnaOrientInfo
  Database: droSim1    Primary Table: mrnaOrientInfo    Row Count: 389   Data last updated: 2018-07-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 612smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 3651394int(10) unsigned range Start position in chromosome
chromEnd 3651790int(10) unsigned range End position in chromosome
name FJ460571varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droSim1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
612chr2L36513943651790FJ46057110000
623chr2L50123665013679DQ0886994160380
78chr2L57615815767899DQ06277110000
636chr2L67194736721001DQ06278510000
639chr2L71102227111585DQ778984013000
646chr2L80248548025764DQ0886962160380
655chr2L92051869207366AM11400220000
661chr2L99815519982256DQ06280720000
667chr2L1077958310784425JX65683670000
667chr2L1077958310784428JX65683360000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.