Schema for xenoRefFlat
  Database: droSim1    Primary Table: xenoRefFlat    Row Count: 385,171   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName PUM1varchar(255) values Name of gene as it appears in genome browser.
name NM_001134123varchar(255) values Name of gene
chrom chr3Rvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 16416739int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 16417904int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 16416739int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 16417904int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 16416739,16417485,16417567,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 16417409,16417567,16417651,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droSim1.xenoMrna.qName (via xenoRefFlat.name)
      droSim1.xenoRefGene.name (via xenoRefFlat.name)
      droSim1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
PUM1NM_001134123chr3R+16416739164179041641673916417904416416739,16417485,16417567,16417714,16417409,16417567,16417651,16417904,
DratNM_001273850chr2R-213712221418242137683213889642137122,2137677,2138168,2141552,2137644,2138101,2139003,2141824,
Vps13NM_001273852chrU-12719204127200951271920412720095512719204,12719325,12719529,12719807,12720050,12719264,12719460,12719751,12720049,12720095,
RpeNM_001273851chr2R-217809221791852178230217908742178092,2178215,2178660,2178901,2178204,2178527,2178843,2179185,
hnrnpa3NM_001328148chr2R-995081399528929950813995289229950813,9952837,9950866,9952892,
SEPTIN8NM_001169035chr3R+505497450567535054974505675325054974,5055805,5055046,5056753,
5-HT2ANM_001170035chr3R+49770151231950140651197211497701,498073,501334,501508,501639,506432,506718,507391,509744,510892,511782,498045,498079,501449,501624,502454,506657,506917,507832,510095,511189,512319,
PLCXD1NM_018390chr3R+21782546220830752208307522083075421782546,21782672,21782771,22083039,21782588,21782708,21782798,22083075,
PLCXD1NM_018390chr3R-21782536217828072178280721782807321782536,21782730,21782770,21782654,21782745,21782807,
SLC35C1NM_018389chr3R+17129879171301491712987917130149117129879,17130149,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.