Schema for xenoRefFlat
  Database: echTel2    Primary Table: xenoRefFlat    Row Count: 470,748   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName MINPP1varchar(255) values Name of gene as it appears in genome browser.
name NM_004897varchar(255) values Name of gene
chrom JH980310varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 34073879int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 34074200int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 34073879int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 34074200int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 34073879,34073984,34074118,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 34073939,34074038,34074200,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        echTel2.xenoRefGene.name (via xenoRefFlat.name)
      echTel2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
MINPP1NM_004897JH980310+34073879340742003407387934074200334073879,34073984,34074118,34073939,34074038,34074200,
MINPP1NM_004897JH980301-40617010406517624061701040651762540617010,40638336,40643125,40647595,40651659,40617341,40638470,40643223,40647793,40651762,
NFKBIL1NM_005007JH980348+11435681114435071143575711443288711435681,11436223,11442301,11442697,11442796,11443370,11443453,11435814,11436494,11442534,11442769,11443296,11443384,11443507,
IER2NM_004907JH980306+13759678137601841376018413760184213759678,13760075,13759712,13760184,
Rbm48NM_172991JH980305+29543409295503282954382129550321829543409,29543821,29543850,29544455,29545485,29548009,29548274,29550287,29543541,29543831,29543998,29544648,29545627,29548021,29548493,29550328,
Myo1eNM_173101JH980330-173306431759137617330964174920653217330643,17330686,17330777,17330852,17330964,17334721,17350381,17356003,17357948,17367068,17368590,17368798,17368976,17384520,17 ...17330658,17330713,17330825,17330863,17331041,17334890,17350586,17356163,17358096,17367214,17368761,17368801,17369087,17384663,17 ...
ZNF229NR_103551JH980338-893790290636179063617906361778937902,8938067,9029923,9030652,9059202,9060261,9063477,8937932,8938256,9030565,9030751,9059703,9060489,9063617,
TOMM40NM_001128917JH980338+9672451968007096724519679553149672451,9673144,9673611,9674631,9674815,9678644,9678842,9679021,9679413,9679682,9679788,9679843,9679924,9679966,9672513,9673206,9673710,9674733,9674921,9678765,9678921,9679124,9679558,9679719,9679818,9679861,9679947,9680070,
RPL23BNM_001179007JH980319-26817512268204922681751226820492426817512,26817688,26819988,26820422,26817583,26817802,26820114,26820492,
BIM1NM_001178907JH980337-4625054651984625054651984462505,463446,463451,465135,462521,463448,463517,465198,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.