Schema for mrnaOrientInfo
  Database: enhLutNer1    Primary Table: mrnaOrientInfo    Row Count: 5   Data last updated: 2020-02-26
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 647smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom QQQE01000072v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 8198467int(10) unsigned range Start position in chromosome
chromEnd 8201979int(10) unsigned range End position in chromosome
name L46804varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        enhLutNer1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
647QQQE01000072v181984678201979L4680430000
614QQQE01000220v138665453867254AY88435310000
595QQQE01000248v114136011418542AY88393140000
73QQQE01000297v1776553788430AY88435050000
585QQQE01018982v16743280EF61995952000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.