Schema for intronEst
  Database: equCab1    Primary Table: intronEst (chr1_intronEst)    Row Count: 1,973   Data last updated: 2013-01-04
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 594smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 579int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 4561int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CX602770varchar(255) values Query sequence name
qSize 705int(10) unsigned range Query sequence size
qStart 126int(10) unsigned range Alignment start position in query
qEnd 705int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 179667691int(10) unsigned range Target sequence size
tStart 1211862int(10) unsigned range Alignment start position in target
tEnd 1217002int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 152,85,107,150,85,longblob   Size of each block
qStarts 126,278,363,470,620,longblob   Start of each block in query.
tStarts 1211862,1212643,1214586,121...longblob   Start of each block in target.

Connected Tables and Joining Fields
        equCab1.all_est.qName (via intronEst.qName)
      equCab1.est.qName (via intronEst.qName)
      equCab1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5945790000044561+CX602770705126705chr1179667691121186212170025152,85,107,150,85,126,278,363,470,620,1211862,1212643,1214586,1214766,1216917,
5945800000044561+CX606059697117697chr1179667691121186212170035152,85,107,150,86,117,269,354,461,611,1211862,1212643,1214586,1214766,1216917,
5947330001154562+CX6025667839743chr117966769112119601217255714,39,85,107,150,86,252,9,23,62,147,254,404,491,1211960,1211975,1212643,1214586,1214766,1216917,1217003,
5945900000033932+CX59439061323613chr117966769112126851217207443,107,150,290,23,66,173,323,1212685,1214586,1214766,1216917,
5945510000043933+CX5942065543554chr117966769112126861217170520,21,107,150,253,3,23,44,151,301,1212686,1212707,1214586,1214766,1216917,
5944150000022002+CX5969004150415chr117966769112147901217207323,102,290,0,23,125,1214790,1214814,1216917,
76355000002226433-CX59688143176431chr117966769131905893417377356,161,138,0,56,217,3190589,3239374,3417239,
621739100002986+DN5069027411741chr117966769147335474735273322,19,699,1,23,42,4733547,4733570,4734574,
62171020000623854-CD4665147120712chr1179667691476385447884207114,136,121,81,137,74,49,0,114,250,371,452,589,663,4763854,4764208,4768507,4780794,4786386,4788220,4788371,
62574300000838143-CX6032517452745chr117966769153177185356604946,90,120,91,41,157,86,92,20,0,46,136,256,347,388,545,631,723,5317718,5318635,5331919,5338648,5340046,5345610,5345952,5356491,5356584,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.