Schema for estOrientInfo
  Database: felCat5    Primary Table: estOrientInfo    Row Count: 913   Data last updated: 2012-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 896smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrB4varchar(255) values Reference sequence chromosome or scaffold
chromStart 40794247int(10) unsigned range Start position in chromosome
chromEnd 40795461int(10) unsigned range End position in chromosome
name AF034791varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 59smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat5.all_est.qName (via estOrientInfo.name)
      felCat5.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
896chrB44079424740795461AF034791559000
857chrX3567888835686352AF19797059000
858chrX3579623335796681AF1979690110300
630chrA159601025960486AW646939000010
653chrA189703448970780AW64675500000
803chrA12865284828661456AW64692450000
950chrA14790077147901255AW64675400000
969chrA15035893950359250AW64675300000
1221chrA18340097883405833AW64676650000
1274chrA19036036090361461AW646765-200021

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.