Schema for xenoMrna
  Database: felCat5    Primary Table: xenoMrna    Row Count: 6,335,655   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 49int(10) unsigned Number of bases that match that aren't repeats
misMatches 6int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 563int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName EZ899595varchar(255) Query sequence name
qSize 118int(10) unsigned Query sequence size
qStart 61int(10) unsigned Alignment start position in query
qEnd 116int(10) unsigned Alignment end position in query
tName chrA1varchar(255) Target sequence name
tSize 239302903int(10) unsigned Target sequence size
tStart 9841int(10) unsigned Alignment start position in target
tEnd 10459int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 15,15,4,21,longblob Size of each block
qStarts 61,76,91,95,longblob Start of each block in query.
tStarts 9841,9932,9954,10438,longblob Start of each block in target.

Connected Tables and Joining Fields
        felCat5.all_est.qName (via xenoMrna.qName)
      felCat5.all_mrna.qName (via xenoMrna.qName)
      felCat5.refGene.name (via xenoMrna.qName)
      felCat5.refSeqAli.qName (via xenoMrna.qName)
      felCat5.xenoRefFlat.name (via xenoMrna.qName)
      felCat5.xenoRefGene.name (via xenoMrna.qName)
      felCat5.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58549600003563++EZ89959511861116chrA1239302903984110459415,15,4,21,61,76,91,95,9841,9932,9954,10438,
5853709500225732478++JO329911920152874chrA12393029033444937392493,126,102,144,152,405,628,730,34449,34709,36360,37248,
58551612500324853877++JO32991310441521041chrA12393029033444938967693,42,112,102,174,118,152,377,419,628,730,923,34449,34665,34723,36360,37248,38849,
58510892160051201110636++AK2922031514891514chrA123930290334619465601288,30,48,48,82,214,119,153,199,115,188,21,89,186,268,338,420,502,716,835,988,1187,1302,1493,34619,34712,34791,35433,36360,37234,38853,40214,41786,45187,46349,46539,
58511482330063251210838++BC1426362035691775chrA123930290334627468461380,30,48,48,82,214,119,153,199,115,188,27,78,69,158,240,310,392,474,688,807,960,1159,1274,1465,1697,34627,34712,34791,35433,36360,37234,38853,40214,41786,45187,46349,46539,46768,
5857261690084611211384++AK23144117542231579chrA123930290334709469881339,69,121,69,114,113,213,22,23,42,21,14,35,223,280,349,528,620,821,934,1158,1185,1208,1373,1530,1544,34709,34765,38853,40274,41785,45188,46348,46566,46594,46618,46780,46937,46953,
58577517200128081411332++AK39729121542231978chrA123930290334709469881539,69,42,15,125,69,114,114,203,22,24,41,21,14,35,223,280,377,572,748,931,1023,1224,1343,1557,1584,1608,1772,1929,1943,34709,34765,35439,37268,38849,40274,41785,45188,46358,46566,46594,46619,46780,46937,46953,
5859941870063271010865++AF242518185821510chrA123930290334800468461139,48,72,203,119,152,140,115,188,27,78,2,63,145,226,429,548,757,897,1012,1203,1432,34800,35433,36360,37245,38853,40214,41845,45187,46349,46539,46768,
5859401780013479986++AY0353771194401192chrA12393029033543346537848,82,214,119,153,199,115,188,40,122,204,418,537,690,889,1004,35433,36360,37234,38853,40214,41786,45187,46349,
5851001192003242910190++BC1071571457221457chrA123930290335433468161048,82,214,119,153,199,115,188,27,48,22,104,186,400,519,672,871,986,1177,1409,35433,36360,37234,38853,40214,41786,45187,46349,46539,46768,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.