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Database: felCat9 Primary Table: xenoMrna Row Count: 4,607,514 Data last updated: 2019-04-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 585 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 145 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 9 | int(10) unsigned | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 1 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 1 | int(10) unsigned | Number of bases inserted in target |
| strand | ++ | char(2) | + or - for strand. First character query, second target (optional) |
| qName | JU181503 | varchar(255) | Query sequence name |
| qSize | 504 | int(10) unsigned | Query sequence size |
| qStart | 293 | int(10) unsigned | Alignment start position in query |
| qEnd | 447 | int(10) unsigned | Alignment end position in query |
| tName | chrA1 | varchar(255) | Target sequence name |
| tSize | 242100913 | int(10) unsigned | Target sequence size |
| tStart | 9474 | int(10) unsigned | Alignment start position in target |
| tEnd | 9629 | int(10) unsigned | Alignment end position in target |
| blockCount | 2 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 93,61, | longblob | Size of each block |
| qStarts | 293,386, | longblob | Start of each block in query. |
| tStarts | 9474,9568, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 145 | 9 | 0 | 0 | 0 | 0 | 1 | 1 | ++ | JU181503 | 504 | 293 | 447 | chrA1 | 242100913 | 9474 | 9629 | 2 | 93,61, | 293,386, | 9474,9568, |
| 585 | 145 | 9 | 0 | 0 | 0 | 0 | 1 | 1 | ++ | JU181504 | 599 | 388 | 542 | chrA1 | 242100913 | 9474 | 9629 | 2 | 93,61, | 388,481, | 9474,9568, |
| 585 | 145 | 9 | 0 | 0 | 0 | 0 | 1 | 1 | ++ | JU181506 | 543 | 332 | 486 | chrA1 | 242100913 | 9474 | 9629 | 2 | 93,61, | 332,425, | 9474,9568, |
| 585 | 78 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | +- | JU904808 | 324 | 1 | 85 | chrA1 | 242100913 | 9476 | 9560 | 1 | 84, | 1, | 242091353, |
| 585 | 306 | 31 | 0 | 0 | 0 | 0 | 1 | 1 | +- | JO577059 | 981 | 283 | 620 | chrA1 | 242100913 | 9476 | 9814 | 2 | 240,97, | 283,523, | 242091099,242091340, |
| 585 | 306 | 31 | 0 | 0 | 0 | 0 | 1 | 1 | +- | JP351359 | 750 | 163 | 500 | chrA1 | 242100913 | 9476 | 9814 | 2 | 240,97, | 163,403, | 242091099,242091340, |
| 585 | 307 | 30 | 0 | 0 | 0 | 0 | 1 | 1 | +- | JU700879 | 1194 | 311 | 648 | chrA1 | 242100913 | 9476 | 9814 | 2 | 240,97, | 311,551, | 242091099,242091340, |
| 585 | 307 | 30 | 0 | 0 | 0 | 0 | 1 | 1 | +- | JU700880 | 1016 | 311 | 648 | chrA1 | 242100913 | 9476 | 9814 | 2 | 240,97, | 311,551, | 242091099,242091340, |
| 585 | 307 | 30 | 0 | 0 | 0 | 0 | 1 | 1 | +- | JU732932 | 814 | 210 | 547 | chrA1 | 242100913 | 9476 | 9814 | 2 | 240,97, | 210,450, | 242091099,242091340, |
| 585 | 307 | 30 | 0 | 0 | 0 | 0 | 1 | 1 | +- | JU732933 | 772 | 210 | 547 | chrA1 | 242100913 | 9476 | 9814 | 2 | 240,97, | 210,450, | 242091099,242091340, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server