Schema for xenoRefFlat
  Database: galGal2    Primary Table: xenoRefFlat    Row Count: 438,401   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CHR18varchar(255) values Name of gene as it appears in genome browser.
name NM_103728varchar(255) values Name of gene
chrom chr7varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 31212405int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 31212555int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 31212405int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 31212555int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 31212405,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 31212555,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal2.xenoMrna.qName (via xenoRefFlat.name)
      galGal2.xenoRefGene.name (via xenoRefFlat.name)
      galGal2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CHR18NM_103728chr7-31212405312125553121240531212555131212405,31212555,
ZNF431NR_138053chrUn-10112600102217011022170110221701210112600,10221677,10112672,10221701,
ACSBG2NM_030924chr28-179990918080701799909180807091799909,1800361,1801544,1802561,1803264,1804616,1804989,1806755,1807932,1799970,1800394,1801676,1802726,1803447,1804742,1805121,1806848,1808070,
RP1NM_001198222chr14-817231381772208172313817722088172313,8172930,8173666,8174421,8174460,8175376,8176247,8177031,8172430,8173017,8173829,8174457,8174489,8175393,8176409,8177220,
OR1L4NM_001005235chr5+61893765516189376551461893,74589,74742,76494,62033,74646,74841,76551,
carnmt1.SNM_001096087chrZ-17329851173434671732985117343467717329851,17330215,17330235,17331718,17335601,17342105,17343287,17329944,17330218,17330340,17331887,17335741,17342252,17343467,
lcmt1.LNM_001095989chr14+865389786704288653897867042898653897,8654895,8656339,8657422,8658156,8665623,8667162,8668011,8670326,8653951,8654989,8656461,8657501,8658208,8665717,8667285,8668101,8670428,
MGC82469NM_001091940chr1+78939296789450787893929678945078878939296,78941352,78941601,78942042,78942828,78943300,78943995,78945023,78939412,78941476,78941688,78942133,78942899,78943384,78944096,78945078,
smarcb1.SNM_001092039chr15+7944818795469679448187954369107944818,7945831,7947141,7947846,7948218,7948858,7949218,7953281,7954329,7954634,7944908,7945948,7947270,7947982,7948346,7949020,7949414,7953413,7954372,7954696,
aoc3NM_001030413chr27_random-1168441261611168441261617116844,117139,124736,125099,125541,125795,126125,117006,117259,125051,125402,125552,126065,126161,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.