Schema for xenoMrna
  Database: gasAcu1    Primary Table: xenoMrna    Row Count: 5,930,818   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 62int(10) unsigned Number of bases that match that aren't repeats
misMatches 19int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 25007int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JT287781varchar(255) Query sequence name
qSize 305int(10) unsigned Query sequence size
qStart 151int(10) unsigned Alignment start position in query
qEnd 232int(10) unsigned Alignment end position in query
tName chrIvarchar(255) Target sequence name
tSize 28185914int(10) unsigned Target sequence size
tStart 79int(10) unsigned Alignment start position in target
tEnd 25167int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 36,2,43,longblob Size of each block
qStarts 151,187,189,longblob Start of each block in query.
tStarts 28160747,28160912,28185792,longblob Start of each block in target.

Connected Tables and Joining Fields
        gasAcu1.all_est.qName (via xenoMrna.qName)
      gasAcu1.all_mrna.qName (via xenoMrna.qName)
      gasAcu1.refGene.name (via xenoMrna.qName)
      gasAcu1.refSeqAli.qName (via xenoMrna.qName)
      gasAcu1.xenoRefGene.name (via xenoMrna.qName)
      gasAcu1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58562190000225007+-JT287781305151232chrI281859147925167336,2,43,151,187,189,28160747,28160912,28185792,
7397260023142173621+-JI298104575119556chrI2818591479173823357,24,42,119,258,514,28012091,28160467,28185793,
7397260023142173621+-JI298105575119556chrI2818591479173823357,24,42,119,258,514,28012091,28160467,28185793,
7397260023142173621+-JI298107575119556chrI2818591479173823357,24,42,119,258,514,28012091,28160467,28185793,
7397260023142173621+-JI298109575119556chrI2818591479173823357,24,42,119,258,514,28012091,28160467,28185793,
7397260023142173621+-JI298111575119556chrI2818591479173823357,24,42,119,258,514,28012091,28160467,28185793,
7397260023142173621+-JI298118575119556chrI2818591479173823357,24,42,119,258,514,28012091,28160467,28185793,
7312942003394430711+-JT216602720441651chrI2818591479430961627,36,33,12,21,42,441,468,504,546,576,609,27754953,27755295,27755643,27755988,27756000,28185793,
7312942003394430711+-JT3261391010767977chrI2818591479430961627,36,33,12,21,42,767,794,830,872,902,935,27754953,27755295,27755643,27755988,27756000,28185793,
7312942003394430711+-JT46640786114224chrI2818591479430961627,36,33,12,21,42,14,41,77,119,149,182,27754953,27755295,27755643,27755988,27756000,28185793,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.