Schema for mrnaOrientInfo
  Database: gorGor6    Primary Table: mrnaOrientInfo    Row Count: 878   Data last updated: 2019-12-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 620smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 4627197int(10) unsigned range Start position in chromosome
chromEnd 4627439int(10) unsigned range End position in chromosome
name AY827149varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        gorGor6.all_mrna.qName (via mrnaOrientInfo.name)
      gorGor6.refFlat.name (via mrnaOrientInfo.name)
      gorGor6.refGene.name (via mrnaOrientInfo.name)
      gorGor6.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
620chr146271974627439AY82714901000
620chr146271974627439AY82715001000
630chr159461795946289FV52620000000
737chr11998792919988003MS88150200000
746chr12112796321184223L3705290000
746chr12112796321184223L3705390000
746chr12115523321176180AF20136940000
850chr13480886134814960DQ88566110000
966chr14996485249988675EF692498110000
1409chr1108093403108093453MF19070800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.