Schema for xenoMrna
  Database: hetGla2    Primary Table: xenoMrna    Row Count: 9,446,904   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 84int(10) unsigned Number of bases that match that aren't repeats
misMatches 8int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 1int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK076277varchar(255) Query sequence name
qSize 2656int(10) unsigned Query sequence size
qStart 1186int(10) unsigned Alignment start position in query
qEnd 1279int(10) unsigned Alignment end position in query
tName AHKG01109621varchar(255) Target sequence name
tSize 44935int(10) unsigned Target sequence size
tStart 859int(10) unsigned Alignment start position in target
tEnd 951int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 68,24,longblob Size of each block
qStarts 1186,1255,longblob Start of each block in query.
tStarts 43984,44052,longblob Start of each block in target.

Connected Tables and Joining Fields
        hetGla2.xenoRefFlat.name (via xenoMrna.qName)
      hetGla2.xenoRefGene.name (via xenoMrna.qName)
      hetGla2.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585848001100+-AK076277265611861279AHKG0110962144935859951268,24,1186,1255,43984,44052,
58586820400516186964++JU477789316218783111AHKG01109621449353849118859175,141,58,27,132,77,196,224,42,1878,2103,2244,2308,2345,2477,2574,2770,3069,3849,4044,4191,4258,4292,7275,8524,11555,11843,
58567513300516567051+-KA6329311069931066AHKG0110962144935385611715783,42,189,37,210,133,114,93,176,248,464,517,744,952,33220,33306,36215,37606,40513,40748,40965,
58571414300227106886+-JT708981104774958AHKG01109621449353972117151183,44,16,81,103,3,102,23,200,130,72,74,157,221,237,318,421,424,526,549,749,886,33220,33306,33364,36215,36304,36422,37558,40511,40545,40751,40891,
5855621330016837011+-JL63876610770763AHKG01109621449353973116794124,194,164,213,0,124,318,550,33256,36215,40511,40749,
5854839600122437065++AB590178255517442547AHKG01109621449354044116884150,102,194,133,1744,2118,2220,2414,4044,7275,8526,11555,
5854839600122437065++EU176754258117572560AHKG01109621449354044116884150,102,194,133,1757,2131,2233,2427,4044,7275,8526,11555,
5854839600122437065++KJ904622266817982601AHKG01109621449354044116884150,102,194,133,1798,2172,2274,2468,4044,7275,8526,11555,
5854859700122437065++DQ893032258117572563AHKG01109621449354044116914150,102,194,136,1757,2131,2233,2427,4044,7275,8526,11555,
58554512300122437067++AF042282292119532845AHKG01109621449354044117794150,102,194,222,1953,2327,2429,2623,4044,7275,8526,11557,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.