Schema for HInvGeneMrna
  Database: hg19    Primary Table: HInvGeneMrna    Row Count: 56,941   Data last updated: 2010-12-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2249int(10) unsigned range Number of bases that match that aren't repeats
misMatches 49int(10) unsigned range Number of bases that don't match
repMatches 672int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 838int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName HIT000018552varchar(255) values Query sequence name
qSize 3101int(10) unsigned range Query sequence size
qStart 128int(10) unsigned range Alignment start position in query
qEnd 3101int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 249250621int(10) unsigned range Target sequence size
tStart 10464int(10) unsigned range Alignment start position in target
tEnd 14409int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 299,15,28,975,474,27,538,751,longblob   Size of each block
qStarts 128,291,306,334,1309,1783,1...longblob   Start of each block in query.
tStarts 10464,10772,10849,11252,126...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg19.HInv.geneId (via HInvGeneMrna.qName)
      hg19.knownToHInv.value (via HInvGeneMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852249496720237838+HIT00001855231011283101chr124925062110464144098299,15,28,975,474,27,538,751,128,291,306,334,1309,1783,1812,2350,10464,10772,10849,11252,12612,13088,13118,13658,
58519362137023912990-HIT000020038199701997chr1249250621143592934312470,69,108,44,162,199,260,259,147,99,154,23,0,470,539,648,692,854,1053,1315,1574,1721,1820,1974,14359,14969,15795,15903,16606,16856,17232,17492,17914,18267,24737,29320,
585153919351111113810-HIT000054422161411596chr124925062114405298091390,12,34,108,44,159,198,136,137,147,99,154,276,18,108,120,154,263,307,466,664,800,937,1084,1183,1337,14405,14559,15004,15795,15903,16606,16857,17232,17605,17914,18267,24737,29533,
585162826361316108795-HIT0000533261748121719chr124925062114405248911350,374,69,110,41,136,26,199,136,137,147,112,154,29,84,458,527,639,680,825,851,1050,1186,1323,1470,1582,14405,14455,14969,15795,15906,16606,16742,16856,17232,17605,17914,18267,24737,
5853319411251411911592-HIT000026002353603497chr1249250621144052948314106,316,271,303,360,198,661,198,260,250,147,99,154,163,39,145,461,738,1043,1404,1602,2263,2461,2723,2973,3120,3219,3373,14405,14513,14969,15240,15543,15903,16104,16857,17232,17492,17914,18267,24737,29320,
58516222137022741013259-HIT000014558195401954chr1249250621144062934512423,69,108,44,162,199,136,140,121,99,154,25,0,423,492,601,645,807,1006,1142,1555,1676,1775,1929,14406,14969,15795,15903,16606,16856,17232,17605,17940,18267,24737,29320,
5852208131260271213247-HIT000012846235402354chr124925062114406300001449,374,69,110,41,162,199,136,137,147,99,154,582,88,0,54,428,497,609,650,812,1011,1147,1284,1431,1530,1684,2266,14406,14455,14969,15795,15906,16606,16856,17232,17605,17914,18267,24737,29320,29912,
585300819127027711784-HIT000017450316103161chr12492506211440629344949,1450,859,198,136,137,147,154,24,0,54,1506,2365,2563,2699,2836,2983,3137,14406,14455,15906,16857,17232,17605,17914,24737,29320,
585408621127012293-HIT000007755423604236chr1249250621144061873331499,859,1876,0,1501,2360,14406,15906,16857,
585320621117500014429-HIT000007722440404402chr1249250621205062933724385,17,2,4387,20506,29320,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.