Schema for humanVidalP2P
  Database: hg19    Primary Table: humanVidalP2P    Row Count: 965,201   Data last updated: 2013-06-14
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc004cwy.4varchar(255) Query gene. Indexed
target uc004cwy.4varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via humanVidalP2P.query)
      hg19.ceBlastTab.query (via humanVidalP2P.query)
      hg19.dmBlastTab.query (via humanVidalP2P.query)
      hg19.drBlastTab.query (via humanVidalP2P.query)
      hg19.foldUtr3.name (via humanVidalP2P.query)
      hg19.foldUtr5.name (via humanVidalP2P.query)
      hg19.gnfAtlas2Distance.query (via humanVidalP2P.query)
      hg19.gnfAtlas2Distance.target (via humanVidalP2P.query)
      hg19.gnfU95Distance.query (via humanVidalP2P.query)
      hg19.gnfU95Distance.target (via humanVidalP2P.query)
      hg19.humanHprdP2P.query (via humanVidalP2P.query)
      hg19.humanHprdP2P.target (via humanVidalP2P.query)
      hg19.humanWankerP2P.query (via humanVidalP2P.query)
      hg19.humanWankerP2P.target (via humanVidalP2P.query)
      hg19.keggPathway.kgID (via humanVidalP2P.query)
      hg19.kgAlias.kgID (via humanVidalP2P.query)
      hg19.kgColor.kgID (via humanVidalP2P.query)
      hg19.kgProtAlias.kgID (via humanVidalP2P.query)
      hg19.kgProtMap2.qName (via humanVidalP2P.query)
      hg19.kgSpAlias.kgID (via humanVidalP2P.query)
      hg19.kgTargetAli.qName (via humanVidalP2P.query)
      hg19.kgTxInfo.name (via humanVidalP2P.query)
      hg19.kgXref.kgID (via humanVidalP2P.query)
      hg19.knownAttrs.kgID (via humanVidalP2P.query)
      hg19.knownBlastTab.query (via humanVidalP2P.query)
      hg19.knownBlastTab.target (via humanVidalP2P.query)
      hg19.knownCanonToDecipher.name (via humanVidalP2P.query)
      hg19.knownCanonical.transcript (via humanVidalP2P.query)
      hg19.knownCds.name (via humanVidalP2P.query)
      hg19.knownGene.name (via humanVidalP2P.query)
      hg19.knownGeneMrna.name (via humanVidalP2P.query)
      hg19.knownGenePep.name (via humanVidalP2P.query)
      hg19.knownGeneTxMrna.name (via humanVidalP2P.query)
      hg19.knownGeneTxPep.name (via humanVidalP2P.query)
      hg19.knownIsoforms.transcript (via humanVidalP2P.query)
      hg19.knownToAllenBrain.name (via humanVidalP2P.query)
      hg19.knownToDecipher.name (via humanVidalP2P.query)
      hg19.knownToEnsembl.name (via humanVidalP2P.query)
      hg19.knownToGnfAtlas2.name (via humanVidalP2P.query)
      hg19.knownToHInv.name (via humanVidalP2P.query)
      hg19.knownToHprd.name (via humanVidalP2P.query)
      hg19.knownToKeggEntrez.name (via humanVidalP2P.query)
      hg19.knownToLocusLink.name (via humanVidalP2P.query)
      hg19.knownToLynx.name (via humanVidalP2P.query)
      hg19.knownToMrna.name (via humanVidalP2P.query)
      hg19.knownToMrnaSingle.name (via humanVidalP2P.query)
      hg19.knownToMupit.name (via humanVidalP2P.query)
      hg19.knownToNextProt.name (via humanVidalP2P.query)
      hg19.knownToPfam.name (via humanVidalP2P.query)
      hg19.knownToRefSeq.name (via humanVidalP2P.query)
      hg19.knownToSuper.gene (via humanVidalP2P.query)
      hg19.knownToTag.name (via humanVidalP2P.query)
      hg19.knownToTreefam.name (via humanVidalP2P.query)
      hg19.knownToU133.name (via humanVidalP2P.query)
      hg19.knownToU133Plus2.name (via humanVidalP2P.query)
      hg19.knownToU95.name (via humanVidalP2P.query)
      hg19.knownToVisiGene.name (via humanVidalP2P.query)
      hg19.knownToWikipedia.name (via humanVidalP2P.query)
      hg19.mmBlastTab.query (via humanVidalP2P.query)
      hg19.rnBlastTab.query (via humanVidalP2P.query)
      hg19.scBlastTab.query (via humanVidalP2P.query)
      hg19.ucscScop.ucscId (via humanVidalP2P.query)
      knownGeneV39.bioCycPathway.kgID (via humanVidalP2P.query)
      knownGeneV39.ceBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.dmBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.drBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.foldUtr3.name (via humanVidalP2P.query)
      knownGeneV39.foldUtr5.name (via humanVidalP2P.query)
      knownGeneV39.gnfAtlas2Distance.query (via humanVidalP2P.query)
      knownGeneV39.gnfAtlas2Distance.target (via humanVidalP2P.query)
      knownGeneV39.kgAlias.kgID (via humanVidalP2P.query)
      knownGeneV39.kgColor.kgID (via humanVidalP2P.query)
      knownGeneV39.kgProtAlias.kgID (via humanVidalP2P.query)
      knownGeneV39.kgSpAlias.kgID (via humanVidalP2P.query)
      knownGeneV39.kgTargetAli.qName (via humanVidalP2P.query)
      knownGeneV39.kgXref.kgID (via humanVidalP2P.query)
      knownGeneV39.knownAttrs.kgID (via humanVidalP2P.query)
      knownGeneV39.knownBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.knownBlastTab.target (via humanVidalP2P.query)
      knownGeneV39.knownCanonical.protein (via humanVidalP2P.query)
      knownGeneV39.knownCanonical.transcript (via humanVidalP2P.query)
      knownGeneV39.knownCds.name (via humanVidalP2P.query)
      knownGeneV39.knownGene.name (via humanVidalP2P.query)
      knownGeneV39.knownGeneMrna.name (via humanVidalP2P.query)
      knownGeneV39.knownGenePep.name (via humanVidalP2P.query)
      knownGeneV39.knownIsoforms.transcript (via humanVidalP2P.query)
      knownGeneV39.knownToEnsembl.name (via humanVidalP2P.query)
      knownGeneV39.knownToGnfAtlas2.name (via humanVidalP2P.query)
      knownGeneV39.knownToHprd.name (via humanVidalP2P.query)
      knownGeneV39.knownToLocusLink.name (via humanVidalP2P.query)
      knownGeneV39.knownToMrna.name (via humanVidalP2P.query)
      knownGeneV39.knownToMrnaSingle.name (via humanVidalP2P.query)
      knownGeneV39.knownToMupit.name (via humanVidalP2P.query)
      knownGeneV39.knownToPfam.name (via humanVidalP2P.query)
      knownGeneV39.knownToRefSeq.name (via humanVidalP2P.query)
      knownGeneV39.knownToSuper.gene (via humanVidalP2P.query)
      knownGeneV39.knownToTag.name (via humanVidalP2P.query)
      knownGeneV39.knownToU133.name (via humanVidalP2P.query)
      knownGeneV39.knownToU95.name (via humanVidalP2P.query)
      knownGeneV39.knownToVisiGene.name (via humanVidalP2P.query)
      knownGeneV39.knownToWikipedia.name (via humanVidalP2P.query)
      knownGeneV39.mmBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.rnBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.scBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.ucscScop.ucscId (via humanVidalP2P.query)

Sample Rows
 
querytargetdistance
uc004cwy.4uc004cwy.40
uc004cwy.4uc004cwx.40
uc004cwx.4uc004cwy.40
uc004cwx.4uc004cwx.40
uc004cwy.4uc003mkc.21
uc004cwy.4uc003mkb.21
uc004cwy.4uc003mka.21
uc004cwx.4uc003mkc.21
uc004cwx.4uc003mkb.21
uc004cwx.4uc003mka.21

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.