Schema for orfeomeMrna
  Database: hg38    Primary Table: orfeomeMrna    Row Count: 38,840   Data last updated: 2019-03-09
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 256int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 341int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName KJ905121varchar(255) values Query sequence name
qSize 391int(10) unsigned range Query sequence size
qStart 68int(10) unsigned range Alignment start position in query
qEnd 325int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 248956422int(10) unsigned range Target sequence size
tStart 35139int(10) unsigned range Alignment start position in target
tEnd 35736int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 35,62,143,16,longblob   Size of each block
qStarts 66,101,164,307,longblob   Start of each block in query.
tStarts 35139,35276,35338,35720,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg38.all_mrna.qName (via orfeomeMrna.qName)
      hg38.mrnaOrientInfo.name (via orfeomeMrna.qName)
      hg38.orfeomeGenes.name (via orfeomeMrna.qName)
      hgFixed.gbCdnaInfo.acc (via orfeomeMrna.qName)
      hgFixed.gbSeq.acc (via orfeomeMrna.qName)
      hgFixed.imageClone.acc (via orfeomeMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585256000112341-KJ90512139168325chr12489564223513935736435,62,143,16,66,101,164,307,35139,35276,35338,35720,
5861377170021098798-KJ9042341536641468chr124895642218522019541212130,69,153,116,46,199,136,137,47,99,112,150,68,198,267,420,545,591,790,926,1063,1111,1210,1322,185220,185490,186316,187128,187244,187378,187754,188129,188438,188485,188790,195262,
5889361000000-KJ8996681071681005chr12489564224507414516781937,66,450741,
5909361000000-KJ8996681071681005chr12489564226857176866541937,66,685717,
5914901000000-KJ90112662467558chr12489564228267018271921491,66,826701,
59214911005573353+KJ9050081625631560chr124895642293930794415213153,163,116,79,285,43,24,148,125,111,169,17,59,63,216,379,495,574,860,904,929,1077,1202,1313,1483,1501,939307,941143,942135,942409,942558,942843,942886,942910,943252,943697,943907,944076,944093,
5922246400001812297-KJ8986022379642314chr124895642294469495924119106,90,136,114,144,102,114,112,140,189,114,111,79,91,121,132,175,153,27,65,171,261,397,511,655,757,871,983,1123,1312,1426,1537,1616,1707,1828,1960,2135,2288,944694,945056,945517,946172,946401,948130,948489,951126,951999,952411,953174,953781,954003,955922,956094,956893,957098,958928,95 ...
5922241700001812297-AM3938432289192267chr124895642294469695924119104,90,136,114,144,102,114,112,140,189,114,111,79,91,121,132,175,153,27,22,126,216,352,466,610,712,826,938,1078,1267,1381,1492,1571,1662,1783,1915,2090,2243,944696,945056,945517,946172,946401,948130,948489,951126,951999,952411,953174,953781,954003,955922,956094,956893,957098,958928,95 ...
592192700000112569+BC1666181990341961chr124895642296069396518912107,260,122,222,117,214,145,168,89,74,182,227,34,141,401,523,745,862,1076,1221,1389,1478,1552,1734,960693,961292,961628,961825,962354,962703,963108,963336,963919,964106,964348,964962,
59256120000175+KJ90419269365628chr12489564229616339622712117,446,65,182,961633,961825,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.