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Database: macEug2 Primary Table: all_mrna Row Count: 544 Data last updated: 2017-10-25
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 404 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 1 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 172 | int(10) unsigned | range | Number of bases inserted in target |
| strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | EF602316 | varchar(255) | values | Query sequence name |
| qSize | 757 | int(10) unsigned | range | Query sequence size |
| qStart | 353 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 757 | int(10) unsigned | range | Alignment end position in query |
| tName | ABQO010000622 | varchar(255) | values | Target sequence name |
| tSize | 3834 | int(10) unsigned | range | Target sequence size |
| tStart | 3197 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 3773 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 2 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 356,48, | longblob | | Size of each block |
| qStarts | 0,356, | longblob | | Start of each block in query. |
| tStarts | 3197,3725, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 404 | 0 | 0 | 0 | 0 | 0 | 1 | 172 | - | EF602316 | 757 | 353 | 757 | ABQO010000622 | 3834 | 3197 | 3773 | 2 | 356,48, | 0,356, | 3197,3725, |
| 585 | 270 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | AY238455 | 271 | 0 | 271 | ABQO010007380 | 478 | 88 | 359 | 1 | 271, | 0, | 88, |
| 585 | 165 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AY856411 | 1594 | 8 | 173 | ABQO010011906 | 4174 | 1178 | 1343 | 1 | 165, | 8, | 1178, |
| 585 | 150 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AY856412 | 1567 | 8 | 158 | ABQO010011906 | 4174 | 1193 | 1343 | 1 | 150, | 8, | 1193, |
| 585 | 335 | 6 | 0 | 0 | 0 | 0 | 1 | 368 | - | EF602312 | 712 | 0 | 341 | ABQO010081259 | 1103 | 112 | 821 | 2 | 276,65, | 371,647, | 112,756, |
| 585 | 537 | 15 | 0 | 0 | 1 | 1 | 1 | 368 | - | EF602313 | 732 | 23 | 576 | ABQO010081259 | 1103 | 112 | 1032 | 3 | 276,196,80, | 156,432,629, | 112,756,952, |
| 585 | 497 | 17 | 0 | 0 | 1 | 1 | 1 | 368 | - | KM269583 | 766 | 251 | 766 | ABQO010081259 | 1103 | 150 | 1032 | 3 | 238,196,80, | 0,238,435, | 150,756,952, |
| 585 | 502 | 12 | 0 | 0 | 1 | 1 | 1 | 368 | - | KM269584 | 766 | 251 | 766 | ABQO010081259 | 1103 | 150 | 1032 | 3 | 238,196,80, | 0,238,435, | 150,756,952, |
| 585 | 382 | 13 | 0 | 0 | 1 | 1 | 2 | 369 | - | EF602311 | 753 | 356 | 752 | ABQO010081259 | 1103 | 268 | 1032 | 4 | 81,38,196,80, | 1,82,120,317, | 268,350,756,952, |
| 585 | 247 | 7 | 0 | 0 | 1 | 1 | 0 | 0 | - | FJ238079 | 501 | 243 | 498 | ABQO010081259 | 1103 | 778 | 1032 | 2 | 174,80, | 3,178, | 778,952, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server