Schema for intronEst
  Database: macEug2    Primary Table: intronEst    Row Count: 172,748   Data last updated: 2017-05-08
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 404int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 172int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName EX207226varchar(255) values Query sequence name
qSize 757int(10) unsigned range Query sequence size
qStart 353int(10) unsigned range Alignment start position in query
qEnd 757int(10) unsigned range Alignment end position in query
tName ABQO010000622varchar(255) values Target sequence name
tSize 3834int(10) unsigned range Target sequence size
tStart 3197int(10) unsigned range Alignment start position in target
tEnd 3773int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 356,48,longblob   Size of each block
qStarts 0,356,longblob   Start of each block in query.
tStarts 3197,3725,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      macEug2.all_est.qName (via intronEst.qName)
      macEug2.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585404000001172-EX207226757353757ABQO0100006223834319737732356,48,0,356,3197,3725,
585710801113145-EX2026437500720ABQO0100199721120163047168517,17,132,487,66,30,47,64,197,684,6304,6322,6340,6472,7102,
5854070000021640-EX196908718311718ABQO0100199721120168668913393,184,130,0,93,277,6866,7471,8783,
5853960000021640-EX195548707311707ABQO0100199721120168778913382,184,130,0,82,266,6877,7471,8783,
585335600001368-EX1986897120341ABQO01008125911031128212276,65,371,647,112,756,
5855351520111368-EX19618073223576ABQO010081259110311210323276,197,79,156,432,630,112,756,953,
5853801320112369-EX203447753356752ABQO01008125911032681032485,34,197,79,1,86,120,318,268,354,756,953,
5856677090031447+EX20004378584767ABQO010111826327294030704239,103,301,40,84,323,426,727,940,2296,2728,3030,
5857143001131447+EX1960937180718ABQO010111826327210823246597,103,467,39,11,0,97,200,667,707,1082,2296,2728,3196,3235,
585352000002436-EX2029237661353ABQO0101157141239608483154,174,24,413,567,741,60,321,824,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.