Schema for xenoRefFlat
  Database: macEug2    Primary Table: xenoRefFlat    Row Count: 598,021   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName ascc2.Svarchar(255) Name of gene as it appears in genome browser.
name NM_001087410varchar(255) Name of gene
chrom GL127509varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 4250int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 24717int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 4250int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 24717int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 10int(10) unsigned Number of exons
exonStarts 4250,4367,4590,4653,4881,15...longblob Exon start positions (or end positions for minus strand item)
exonEnds 4313,4422,4595,4707,4956,15...longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      macEug2.xenoMrna.qName (via xenoRefFlat.name)
      macEug2.xenoRefGene.name (via xenoRefFlat.name)
      macEug2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ascc2.SNM_001087410GL127509+425024717425024717104250,4367,4590,4653,4881,15476,21510,23858,24101,24549,4313,4422,4595,4707,4956,15644,21561,23939,24104,24717,
KIAA0319NM_001350409ABQO010403542-1222151222151122,215,
KIAA0319NM_001350410GL099884-38220605113822060511538220,42399,53996,55414,60427,38343,42504,54071,55552,60511,
RABC2ANM_001342711GL046628-177219401772194011772,1940,
kvs-5NM_001307396GL162528-427044294270442914270,4429,
DYNLL1NM_001037494ABQO010868305-4398846148842439,614,498,884,
TAF1CNM_001243157GL088204-437257584372558954372,4527,4897,5532,5683,4405,4572,5476,5589,5758,
sema3gbNM_001014824GL143598-1022851091441022851091448102285,103569,103890,105536,107550,108260,108724,109105,102381,103632,104025,105626,107640,108404,108841,109144,
TCF4NM_001243236GL103236-28329291882918829188528329,28568,28853,28936,28994,28538,28583,28925,28983,29188,
CAB39LNM_001287339GL056697+39830708431307084398,7183,11361,30642,542,7348,11481,30708,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.