Schema for estOrientInfo
  Database: melGal1    Primary Table: estOrientInfo    Row Count: 15,656   Data last updated: 2016-07-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1096smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 67007616int(10) unsigned range Start position in chromosome
chromEnd 67007964int(10) unsigned range End position in chromosome
name AF062413varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      melGal1.all_est.qName (via estOrientInfo.name)
      melGal1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1096chr16700761667007964AF06241300000
636chr1267471506747392AF06241501000
739chr142031462520314996AF06241400000
617chr2542064874206737AF06240800000
599chr419621061962363AF06240700000
730chr41906910319069374AF06241100000
1087chr46583191965832054AF06241000200
943chr54702453547024737AF06241201100
756chr72242957422429637AF06241200100
647chr981899028190335AF07047100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.