Schema for xenoRefFlat
  Database: melGal5    Primary Table: xenoRefFlat    Row Count: 231,886   Data last updated: 2017-01-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName HCLS1varchar(255) values Name of gene as it appears in genome browser.
name NM_001031401varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 18689int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 26934int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 18689int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 25952int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 18int(10) unsigned range Number of exons
exonStarts 18689,18861,19779,20344,219...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 18740,18994,19888,20401,220...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      melGal5.xenoRefGene.name (via xenoRefFlat.name)
      melGal5.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
HCLS1NM_001031401chr1+186892693418689259521818689,18861,19779,20344,21952,22218,22613,23158,23425,24003,24504,24581,24973,25389,25815,26176,26634,26898,18740,18994,19888,20401,22063,22324,22675,23216,23559,24112,24577,24764,24980,25461,26167,26260,26839,26934,
hcls1.LNM_001089964chr1+18690235441869023544718690,18865,19779,21951,22218,22618,23430,18729,18994,19878,22063,22329,22674,23544,
hcls1NM_001141811chr1+18690259401869025940918690,18874,19008,19782,20346,21952,22218,23427,25807,18741,18994,19011,19887,20401,22063,22325,23538,25940,
hcls1NM_001045006chr1+18690259461869025946918690,18861,19077,19782,21951,22618,23427,24046,25823,18740,18994,19080,19920,22063,22674,23538,24061,25946,
hcls1NM_001011314chr1+18690259491869025949918690,18865,19779,21951,22218,22614,23430,25424,25817,18729,18994,19887,22063,22325,22674,23544,25463,25949,
Hcls1NM_001011898chr1+18690259521869025949918690,18865,19156,19782,20346,21952,23424,25424,25817,18741,18994,19159,19887,20401,22059,23439,25466,25952,
HCLS1NM_001035057chr1+18690259521869025952818690,18865,19156,19782,20346,21951,25424,25817,18741,18994,19159,19887,20400,22023,25466,25952,
HCLS1NM_001257947chr1+18690259521869025952818690,18865,19156,19782,20346,21952,25424,25817,18741,18994,19159,19887,20401,22059,25466,25952,
HCLS1NM_001283552chr1+18690259521869025952818690,18865,19156,19782,20346,21952,25424,25817,18741,18994,19159,19887,20401,22059,25466,25952,
HCLS1NM_001292041chr1+18690259521869025952818690,18865,19156,19782,20346,21952,25424,25817,18741,18994,19159,19887,20401,22023,25466,25952,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.