Schema for orfeomeGenes
  Database: mm10    Primary Table: orfeomeGenes    Row Count: 2,273   Data last updated: 2018-10-16
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 619smallint(5) unsigned range Indexing field to speed chromosome range queries.
name BC148437varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 4491717int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 4493408int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 4491718int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 4493406int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 4491717,4493099,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 4492668,4493408,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via orfeomeGenes.name)
      hgFixed.gbSeq.acc (via orfeomeGenes.name)
      hgFixed.imageClone.acc (via orfeomeGenes.name)
      mm10.all_mrna.qName (via orfeomeGenes.name)
      mm10.mrnaOrientInfo.name (via orfeomeGenes.name)
      mm10.orfeomeMrna.qName (via orfeomeGenes.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
619BC148437chr1-449171744934084491718449340624491717,4493099,4492668,4493408,
619BC153021chr1-449171744934084491717449340624491717,4493099,4492668,4493408,
1BC160286chr1-8363476880394483634768803943178363476,8414202,8445026,8447979,8463393,8465436,8554724,8583204,8595411,8607069,8624778,8677806,8677936,8679072,8681972,8782762, ...8363633,8414313,8445119,8448132,8463465,8465553,8554763,8583334,8595542,8607152,8624881,8677848,8677980,8679130,8682029,8782897, ...
82BC156349chr1+100450851013614310045085101361422910045085,10047423,10058719,10064332,10065322,10066425,10074859,10077171,10082252,10083500,10085746,10088050,10088881,10090187,10 ...10045184,10047526,10058823,10064413,10065421,10066820,10074946,10077242,10082346,10083558,10085952,10088184,10088960,10090317,10 ...
723BC148787chr1-18115628181370501811562818137050718115628,18122737,18124231,18128641,18130158,18134038,18136987,18115756,18122826,18124329,18128790,18130249,18134173,18137050,
723BC141508chr1-18115630181370501811563118137050718115630,18122737,18124231,18128641,18130158,18134038,18136987,18115756,18122826,18124329,18128790,18130249,18134173,18137050,
724BC148782chr1-18236472182374431823647218237443218236472,18237373,18236660,18237443,
724BC141502chr1-18236474182374431823647518237443218236474,18237373,18236660,18237443,
724BC140329chr1-18251201182650831825120218265080218251201,18265025,18251333,18265083,
724BC156759chr1-18260524182650831826052418265080218260524,18265025,18260666,18265083,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.