Schema for xenoMrna
  Database: mm10    Primary Table: xenoMrna    Row Count: 4,359,896   Data last updated: 2020-08-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 609smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 154int(10) unsigned Number of bases that match that aren't repeats
misMatches 22int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 1int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JL976967varchar(255) Query sequence name
qSize 490int(10) unsigned Query sequence size
qStart 302int(10) unsigned Alignment start position in query
qEnd 478int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 195471971int(10) unsigned Target sequence size
tStart 3207135int(10) unsigned Alignment start position in target
tEnd 3207312int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 47,129,longblob Size of each block
qStarts 302,349,longblob Start of each block in query.
tStarts 192264659,192264707,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      mm10.all_est.qName (via xenoMrna.qName)
      mm10.all_mrna.qName (via xenoMrna.qName)
      mm10.refGene.name (via xenoMrna.qName)
      mm10.refSeqAli.qName (via xenoMrna.qName)
      mm10.xenoRefFlat.name (via xenoMrna.qName)
      mm10.xenoRefGene.name (via xenoMrna.qName)
      mm10.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
60915422000011+-JL976967490302478chr119547197132071353207312247,129,302,349,192264659,192264707,
60976800115111++LE011052274174273chr119547197132103673210462239,45,174,228,3210367,3210417,
609851145001170113675++JU53179428428592556chr1195471971321355432152251551,21,32,64,90,47,64,132,173,53,21,46,93,42,67,859,1014,1155,1189,1351,1473,1520,1600,1761,1934,1992,2022,2068,2435,2489,3213554,3213686,3213825,3213857,3214003,3214120,3214168,3214250,3214411,3214585,3214642,3214673,3214721,3215106,3215158,
6092453800320218+-JU33838333623326chr119547197132140023214303554,64,48,25,92,23,92,156,208,234,192257668,192257739,192257804,192257852,192257877,
6092313000442240+-JV49370237559362chr119547197132140023214303554,42,46,27,92,59,145,192,242,270,192257668,192257756,192257804,192257850,192257877,
761785195001897511205804+-JV706230296102955chr1195471971321401234217962095,961,77,6,11,36,18,60,73,14,43,46,42,136,111,54,42,46,27,82,0,95,1065,1280,1287,1342,1451,1658,1726,2168,2194,2321,2370,2413,2550,2662,2748,2795,2845,2873,192050175,192255003,192255964,192256152,192256158,192256214,192256520,192256676,192256745,192257182,192257207,192257333,19225737 ...
609177190031016+-JV45589322114220chr119547197132140133214215442,46,27,81,14,61,111,139,192257756,192257804,192257850,192257877,
762187230001893713454410+-AB067476344113355chr11954719713214092367091922106,262,200,961,72,16,19,60,69,46,12,9,14,43,47,41,136,111,54,64,48,27,1,110,372,572,1542,1940,1957,2139,2207,2284,2456,2469,2649,2675,2802,2852,2894,3031,3143,3212,3276,3328,191801052,191801158,192050070,192255003,192255964,192256518,192256534,192256676,192256745,192256820,192256999,192257024,19225718 ...
7625472610023101318454480+-AY534241392503821chr11954719713214092367138027171,265,262,200,961,72,10,13,6,11,38,18,60,69,46,12,9,14,43,47,41,136,111,54,64,48,27,0,308,576,838,1038,2008,2170,2205,2223,2230,2284,2408,2605,2673,2750,2922,2935,3115,3141,3268,3318,3360,3497,3609,3678,3742,3794 ...191800591,191800893,191801158,192050070,192255003,192255964,192256118,192256138,192256152,192256158,192256212,192256520,19225667 ...
6091501500341240+-JV53246122821227chr119547197132140983214303454,42,46,23,21,107,154,204,192257668,192257756,192257804,192257850,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.