Schema for mrnaOrientInfo
  Database: mm39    Primary Table: mrnaOrientInfo    Row Count: 2,087,675   Data last updated: 2020-08-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 608smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3056357int(10) unsigned Start position in chromosome
chromEnd 3056384int(10) unsigned End position in chromosome
name AB351640varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      mm39.all_mrna.qName (via mrnaOrientInfo.name)
      mm39.kgXref.refseq (via mrnaOrientInfo.name)
      mm39.knownToRefSeq.value (via mrnaOrientInfo.name)
      mm39.refFlat.name (via mrnaOrientInfo.name)
      mm39.refGene.name (via mrnaOrientInfo.name)
      mm39.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
608chr130563573056384AB35164000000
608chr130563593056384AB35015400000
608chr130563603056384AB35293800000
608chr130563623056835LF28848200000
608chr130563623056835MA52405900000
608chr130567573056787DQ68552800000
608chr130567583056784DQ70672700000
608chr130567603056790DQ54017700000
608chr130567643056792AB35105800000
608chr130568023056828DQ56745600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.